Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PECWA_RS03015 Genome accession   NC_013421
Coordinates   663111..663659 (+) Length   182 a.a.
NCBI ID   WP_012822379.1    Uniprot ID   -
Organism   Pectobacterium parmentieri WPP163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 658111..668659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PECWA_RS03000 (Pecwa_0617) - 659131..659883 (+) 753 WP_012822376.1 PFL_4669 family integrating conjugative element protein -
  PECWA_RS03005 (Pecwa_0618) - 659898..661907 (+) 2010 WP_012822377.1 DNA topoisomerase III -
  PECWA_RS03010 (Pecwa_0619) - 662542..663051 (+) 510 WP_012822378.1 STY4534 family ICE replication protein -
  PECWA_RS03015 (Pecwa_0620) ssb 663111..663659 (+) 549 WP_012822379.1 single-stranded DNA-binding protein Machinery gene
  PECWA_RS03020 (Pecwa_0621) - 663763..664347 (+) 585 WP_012822380.1 hypothetical protein -
  PECWA_RS03025 (Pecwa_0622) - 664419..664856 (+) 438 WP_012822381.1 DUF29 domain-containing protein -
  PECWA_RS23025 (Pecwa_0623) - 665007..666350 (+) 1344 WP_012822382.1 TcpQ domain-containing protein -
  PECWA_RS03035 (Pecwa_0624) - 666350..666796 (+) 447 WP_012822383.1 type IV pilus biogenesis protein PilM -
  PECWA_RS03040 (Pecwa_0625) - 666806..668470 (+) 1665 WP_012822384.1 PilN family type IVB pilus formation outer membrane protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20077.40 Da        Isoelectric Point: 7.1665

>NTDB_id=35498 PECWA_RS03015 WP_012822379.1 663111..663659(+) (ssb) [Pectobacterium parmentieri WPP163]
MASRGVNKVTLIGFLGQDPEVRYMPNGNAVTGITMATSETWRDKQTGEEKERTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDSAGVDRWTTEIVVSQRGTMQMLGSRPNDGNNNQSAANTSWGKPQQPAAPAHSGTPQSQRPAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=35498 PECWA_RS03015 WP_012822379.1 663111..663659(+) (ssb) [Pectobacterium parmentieri WPP163]
ATGGCTTCACGTGGCGTAAATAAAGTAACACTTATCGGATTTTTGGGGCAGGATCCCGAAGTTCGTTATATGCCAAATGG
TAACGCAGTTACTGGTATTACTATGGCAACGTCAGAAACCTGGCGCGATAAACAAACTGGCGAAGAGAAAGAGCGTACTG
AATGGCACCGTGTGGTGATATTTGGCAAGCTTGCAGAAATTGCCGGAGAGTATTTGCGTAAAGGATCTCAAGTTTACATT
GAAGGGCAACTTCAAACACGTAAGTGGCAAGATAGCGCGGGTGTAGATCGTTGGACGACCGAAATTGTAGTCAGCCAGCG
TGGCACGATGCAGATGTTAGGATCTCGCCCGAACGACGGAAATAACAACCAAAGTGCGGCCAACACTTCATGGGGAAAAC
CTCAGCAGCCAGCAGCACCGGCACACAGTGGTACCCCTCAGTCTCAACGTCCAGCTGGCAATGAACCGCCGATGGATTTT
GACGACGACATACCGTTTCTGGGGTTTGGCTATGGCGTATGTCGTAAAGCGATTTATGCCGTATCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.797

97.253

0.659
  ssb Glaesserella parasuis strain SC1401

50.829

99.451

0.505
  ssb Neisseria meningitidis MC58

46.591

96.703

0.451
  ssb Neisseria gonorrhoeae MS11

46.067

97.802

0.451

Multiple sequence alignment