Detailed information NTG0354956

Bioinformatically predicted

Overview

• Name: tfoS
• Type: Regulator
• Locus tag: GPY21_RS20065
• Genome accession: NZ_CP046754
• Coordinates: 2287030..2290401 (-)
• Length: 1123 a.a.
• NCBI ID: WP_005496068.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2015AW-0174
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2282030..2295401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY21_RS20035	-	2282873..2283301 (+)	429	WP_005496061.1	HIT domain-containing protein	-
GPY21_RS20040	-	2283419..2283649 (-)	231	WP_005496063.1	FeoC-like transcriptional regulator	-
GPY21_RS20045	feoB	2283646..2285922 (-)	2277	WP_005496064.1	Fe(2+) transporter permease subunit FeoB	-
GPY21_RS20050	-	2285922..2286149 (-)	228	WP_005455496.1	FeoA family protein	-
GPY21_RS20065	tfoS	2287030..2290401 (-)	3372	WP_005496068.1	AraC family transcriptional regulator	Regulator
GPY21_RS20070	znuA	2290612..2291490 (-)	879	WP_005496070.1	zinc ABC transporter substrate-binding protein ZnuA	-
GPY21_RS20075	znuC	2291569..2292357 (+)	789	WP_005486019.1	zinc ABC transporter ATP-binding protein ZnuC	-
GPY21_RS20080	znuB	2292350..2293135 (+)	786	WP_005455500.1	zinc ABC transporter permease subunit ZnuB	-
GPY21_RS20085	sucD	2293273..2294145 (-)	873	WP_005496073.1	succinate--CoA ligase subunit alpha	-
GPY21_RS20090	sucC	2294145..2295311 (-)	1167	WP_005496074.1	ADP-forming succinate--CoA ligase subunit beta	-

Sequence

Protein

• Length: 1123 a.a.
• Molecular weight: 126839.36 Da
• Isoelectric Point: 5.5776

>NTDB_id=354956 GPY21_RS20065 WP_005496068.1 2287030..2290401(-) (tfoS) [Vibrio parahaemolyticus strain 2015AW-0174]
MLRQLVLIFWGLFISSQAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKVSFPYLQVMAGHAVEHIALDDTNRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLPGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQFAILGFLVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPMERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIAEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDS
HAN

Nucleotide

• Length: 3372 bp

>NTDB_id=354956 GPY21_RS20065 WP_005496068.1 2287030..2290401(-) (tfoS) [Vibrio parahaemolyticus strain 2015AW-0174]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCAAGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTAT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACCGCAAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTAA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTTTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGGTCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACTAATCAAGAGTATTGGGTTGGTACTGAACACGGTTTGTATCTCTACTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAACTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGACAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAACTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAAA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGTTTGGAGATATTCCAATTGGAGGGGCTG
AAAAAGGTTAGCTTCCCTTATTTACAAGTAATGGCTGGGCATGCTGTTGAGCATATTGCTCTAGACGACACAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCTTATATGATACCGAAGATAAACTTTTTATTGGTACGGATCACGGCATT
TATGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGCGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTCGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGCCCGGTGAGTTAGTTAAACATTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGTGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTTTACTACCGCTTAAACGAAGACGACCGATGGCAGACTTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGTTTGCGATATTAGGCTTTCTCGTCTCAATTTCTACGCTTATCGGCCT
TATCATGTACTGGCGTTCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAAC
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAATGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTAAATGAGCTTAAAAGTGCTCCAGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTCGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTTAATCTGGATGTTATCTTCAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGTTAGAAGAGGGGCGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCTAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAGTTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCAAAAGAGTTGAGCCATGTCGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGCCGAAGAAAAAGCCAGTCCAG
AGAATGAGTGGCTACAAAAGGTTTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGTACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAATTGCGGTTTCA
ATGATCCCTCTTACTTCAGCCAGAAGTTCAAGTTGCACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAGACAGT
CACGCAAATTAG

Domains

Predicted by InterProScan.

• Helix-turn-helix domain (HTH_18) (1040-1114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoS	Vibrio cholerae O1 biovar El Tor strain E7946	38.448	100	0.393