Detailed information NTG0354894

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPY21_RS08670
• Genome accession: NZ_CP046754
• Coordinates: 1772..3019 (+)
• Length: 415 a.a.
• NCBI ID: WP_083101747.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2015AW-0174
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1..8019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY21_RS08655	-	20..604 (+)	585	WP_031828993.1	YhgN family NAAT transporter	-
GPY21_RS08660	-	657..923 (-)	267	WP_005496405.1	DUF1145 domain-containing protein	-
GPY21_RS08665	rsmD	949..1548 (-)	600	WP_005455148.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPY21_RS08670	pilA	1772..3019 (+)	1248	WP_083101747.1	signal recognition particle-docking protein FtsY	Machinery gene
GPY21_RS08675	ftsE	3042..3716 (+)	675	WP_005481953.1	cell division ATP-binding protein FtsE	-
GPY21_RS08680	ftsX	3706..4674 (+)	969	WP_005481956.1	permease-like cell division protein FtsX	-
GPY21_RS08685	rpoH	4850..5710 (+)	861	WP_005490420.1	RNA polymerase sigma factor RpoH	-
GPY21_RS08690	glpE	6202..6522 (+)	321	WP_005496409.1	thiosulfate sulfurtransferase GlpE	-
GPY21_RS08695	glpG	6522..7364 (+)	843	WP_005496414.1	rhomboid family intramembrane serine protease GlpG	-
GPY21_RS08700	-	7424..7834 (-)	411	WP_005460376.1	flagellar basal body-associated protein FliL	-

Sequence

Protein

• Length: 415 a.a.
• Molecular weight: 45138.73 Da
• Isoelectric Point: 4.2380

>NTDB_id=354894 GPY21_RS08670 WP_083101747.1 1772..3019(+) (pilA) [Vibrio parahaemolyticus strain 2015AW-0174]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVKEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEAEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMD
TTTKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGK
KVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVR
VMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP
FETQEFIDALFSREE

Nucleotide

• Length: 1248 bp

>NTDB_id=354894 GPY21_RS08670 WP_083101747.1 1772..3019(+) (pilA) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAACCAAAAACTGA
AGAAACAGTAAAAGAAGAAGCAGTGGAAGCTCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCTCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAA
GCCGACAGAAAGCTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTACGAAAGCGAACATCGGTGCTGGTTTCTTTGGTC
TGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGAC
ACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCT
GCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCTAGATATCGACAGTAGCAAAACACCTTATGTCA
TCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAG
AAAGTGATGTTAGCAGCTGGCGATACTTTCCGAGCGGCCGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGT
TCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCG
TCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGT
GTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAG
CCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCG
TTATTTTCGCTATCGCTGATCAGTTTGGTATTCCAATTCGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCT
TTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (212-411)

• SRP54-type protein, helical bundle domain (SRP54_N) (131-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.329	93.735	0.453