Detailed information NTG0354888

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPX93_RS12565
• Genome accession: NZ_CP046749
• Coordinates: 2758096..2759301 (-)
• Length: 401 a.a.
• NCBI ID: WP_088128779.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2015V-1118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2753096..2764301

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX93_RS12545	sthA	2753758..2755158 (+)	1401	WP_123163051.1	Si-specific NAD(P)(+) transhydrogenase	-
GPX93_RS12550	rpoH	2755361..2756221 (-)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPX93_RS12555	ftsX	2756391..2757383 (-)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GPX93_RS12560	ftsE	2757373..2758047 (-)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPX93_RS12565	pilA	2758096..2759301 (-)	1206	WP_088128779.1	signal recognition particle-docking protein FtsY	Machinery gene
GPX93_RS12570	rsmD	2759505..2760104 (+)	600	WP_001189767.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPX93_RS12575	-	2760101..2760367 (+)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPX93_RS12580	-	2760417..2761046 (-)	630	WP_000062272.1	lysoplasmalogenase	-
GPX93_RS12585	-	2761147..2761419 (-)	273	WP_123163052.1	hypothetical protein	-
GPX93_RS12590	-	2761922..2762290 (-)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPX93_RS12595	-	2762495..2762824 (+)	330	WP_095465245.1	DUF2500 domain-containing protein	-
GPX93_RS12600	-	2762994..2763464 (+)	471	WP_000224703.1	Dps family protein	-

Sequence

Protein

• Length: 401 a.a.
• Molecular weight: 43897.54 Da
• Isoelectric Point: 4.3651

>NTDB_id=354888 GPX93_RS12565 WP_088128779.1 2758096..2759301(-) (pilA) [Vibrio cholerae strain 2015V-1118]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAETALTETETETETETETETETETETETETETET
ATVEPARIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKAS
RQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAA
VEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM
LTLDAGTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSRE
E

Nucleotide

• Length: 1206 bp

>NTDB_id=354888 GPX93_RS12565 WP_088128779.1 2758096..2759301(-) (pilA) [Vibrio cholerae strain 2015V-1118]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACA
GCCACGGTTGAACCTGCACGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCGTTTAAAGCGCAGTTTGAG
TCGCACCAAAGCGAATATTGGCGCAGGCTTCTTTGGCCTGTTTAAAGGCAAAAAAATTGATGATGACCTGTTCGAAGAGC
TCGAAGAACAACTGCTGATTGCCGATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAAAGCTTCT
CGCCAGCAACTGCGTGATGGGGAAGCACTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCA
GCCATTGGTGATCGACACTGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGA
TCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCG
GTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGT
CATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGTCGTCTGCAAAACA
AAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATG
TTGACGCTGGATGCGGGTACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCAT
TACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTT
ATATCGGTGTCGGCGAGAAAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAA
GAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (117-178)

• SRP54-type protein, GTPase domain (SRP54) (198-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.275	86.035	0.424