Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   GPX93_RS05960 Genome accession   NZ_CP046749
Coordinates   1301401..1301781 (-) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae strain 2015V-1118     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1296401..1306781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS05940 - 1296567..1297973 (+) 1407 WP_095473603.1 MDR family MFS transporter -
  GPX93_RS05945 - 1298129..1299643 (+) 1515 WP_123162637.1 deoxyribodipyrimidine photo-lyase -
  GPX93_RS05950 - 1299789..1300103 (+) 315 WP_000312393.1 multidrug efflux SMR transporter -
  GPX93_RS05955 - 1300158..1301393 (-) 1236 WP_123162638.1 methyl-accepting chemotaxis protein -
  GPX93_RS05960 pilL-C 1301401..1301781 (-) 381 WP_000045526.1 response regulator Machinery gene
  GPX93_RS05965 - 1301774..1302034 (-) 261 WP_001143862.1 hypothetical protein -
  GPX93_RS05970 - 1302024..1304297 (-) 2274 WP_184482741.1 chemotaxis protein CheA -
  GPX93_RS05975 - 1304306..1304677 (-) 372 WP_000757478.1 response regulator -
  GPX93_RS05980 - 1304677..1305522 (-) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  GPX93_RS05985 - 1305533..1306189 (-) 657 WP_000974698.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=354854 GPX93_RS05960 WP_000045526.1 1301401..1301781(-) (pilL-C) [Vibrio cholerae strain 2015V-1118]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=354854 GPX93_RS05960 WP_000045526.1 1301401..1301781(-) (pilL-C) [Vibrio cholerae strain 2015V-1118]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389

Multiple sequence alignment