Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPX93_RS04355 Genome accession   NZ_CP046749
Coordinates   938334..938936 (+) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain 2015V-1118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 933334..943936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS04325 - 933355..934446 (+) 1092 WP_001964328.1 response regulator -
  GPX93_RS18970 - 934616..934747 (+) 132 WP_000013199.1 hypothetical protein -
  GPX93_RS04335 - 934747..935145 (+) 399 WP_001880857.1 YbaN family protein -
  GPX93_RS04340 apt 935277..935822 (+) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  GPX93_RS04345 dnaX 935841..937919 (+) 2079 WP_123162528.1 DNA polymerase III subunit gamma/tau -
  GPX93_RS04350 - 937990..938319 (+) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GPX93_RS04355 recR 938334..938936 (+) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GPX93_RS04360 - 939063..939311 (-) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  GPX93_RS04365 - 939449..939886 (+) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  GPX93_RS04370 - 939980..940723 (-) 744 WP_001109956.1 YciK family oxidoreductase -
  GPX93_RS04375 sohB 940882..941943 (+) 1062 WP_123162529.1 protease SohB -
  GPX93_RS04380 - 942068..943135 (-) 1068 WP_123162530.1 PLP-dependent cysteine synthase family protein -
  GPX93_RS04385 - 943260..943715 (+) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=354841 GPX93_RS04355 WP_001260579.1 938334..938936(+) (recR) [Vibrio cholerae strain 2015V-1118]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=354841 GPX93_RS04355 WP_001260579.1 938334..938936(+) (recR) [Vibrio cholerae strain 2015V-1118]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAATCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACAGGGCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTAGATTATCGCTTGCAGC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGTCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
AACCTTATCGCATTCGCTGTTAGGTCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44