Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BAMTA208_RS02025 Genome accession   NC_017188
Coordinates   409038..409472 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens TA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 404038..414472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS01995 (BAMTA208_01950) - 404706..405568 (+) 863 Protein_379 SDR family oxidoreductase -
  BAMTA208_RS02000 (BAMTA208_01955) - 405581..406084 (+) 504 WP_013351044.1 D-lyxose/D-mannose family sugar isomerase -
  BAMTA208_RS02005 (BAMTA208_01960) - 406172..406795 (+) 624 WP_013351045.1 GNAT family N-acetyltransferase -
  BAMTA208_RS02010 (BAMTA208_01965) - 406802..407224 (+) 423 WP_013351046.1 pyridoxamine 5'-phosphate oxidase family protein -
  BAMTA208_RS02015 (BAMTA208_01970) - 407724..408533 (+) 810 WP_013351047.1 lipid II flippase Amj family protein -
  BAMTA208_RS02020 (BAMTA208_01975) - 408574..408864 (-) 291 WP_013351048.1 DUF3817 domain-containing protein -
  BAMTA208_RS02025 (BAMTA208_01980) lrpC 409038..409472 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  BAMTA208_RS02030 (BAMTA208_01985) - 409537..411723 (+) 2187 WP_014469759.1 DNA topoisomerase III -
  BAMTA208_RS02035 (BAMTA208_01990) - 411959..413044 (+) 1086 WP_013351051.1 hypothetical protein -
  BAMTA208_RS02040 (BAMTA208_01995) - 413025..413873 (+) 849 WP_013351052.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=35484 BAMTA208_RS02025 WP_003156263.1 409038..409472(+) (lrpC) [Bacillus amyloliquefaciens TA208]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=35484 BAMTA208_RS02025 WP_003156263.1 409038..409472(+) (lrpC) [Bacillus amyloliquefaciens TA208]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGAAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGCATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment