Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPX93_RS00150 Genome accession   NZ_CP046749
Coordinates   31490..33325 (+) Length   611 a.a.
NCBI ID   WP_001995011.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26490..38325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS00130 - 26790..27458 (-) 669 WP_046122355.1 LysE family translocator -
  GPX93_RS00135 - 27533..28336 (-) 804 WP_000381934.1 AraC family transcriptional regulator -
  GPX93_RS00140 ggt 28493..30247 (-) 1755 WP_184482555.1 gamma-glutamyltransferase -
  GPX93_RS00145 rarD 30421..31263 (-) 843 WP_238690856.1 EamA family transporter RarD -
  GPX93_RS00150 recQ 31490..33325 (+) 1836 WP_001995011.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPX93_RS00155 - 33318..33617 (+) 300 WP_033929007.1 DUF3630 family protein -
  GPX93_RS00160 - 33788..34150 (+) 363 WP_001235441.1 hypothetical protein -
  GPX93_RS00165 - 34186..36015 (-) 1830 WP_172440125.1 ABC transporter ATP-binding protein -
  GPX93_RS00170 fhuA 36150..38249 (+) 2100 WP_184482559.1 TonB-dependent siderophore receptor FhuA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69094.40 Da        Isoelectric Point: 7.1164

>NTDB_id=354812 GPX93_RS00150 WP_001995011.1 31490..33325(+) (recQ) [Vibrio cholerae strain 2015V-1118]
MTATLMAESSALLATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=354812 GPX93_RS00150 WP_001995011.1 31490..33325(+) (recQ) [Vibrio cholerae strain 2015V-1118]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCCTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTTGGTCAGCAAGAGGTGATTGAAGCGGCGTTGGCTGGGCGTGATAGCTTGGTCATCATGCCGACTGGCG
GTGGTAAATCACTCTGTTACCAGATCCCTGCGTTAGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCTGCCGAGTGCGTGAATTCTACTTTGGCGCGCGAGGAGCT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTATATGTCTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCAACTGC
GGATGACGCGACGCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACACAAGCCGGTTTCGCAAGTGATCCGCTATTTGGAAACGCAGCGTGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTTACCGCGA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATCGGCCGCGATCACAGTCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGATAAGTTATCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCATTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.468

97.872

0.396