Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   GPY00_RS13780 Genome accession   NZ_CP046747
Coordinates   2977293..2977667 (+) Length   124 a.a.
NCBI ID   WP_158128680.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2972293..2982667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS13755 - 2972885..2973541 (+) 657 WP_044127631.1 HEAT repeat domain-containing protein -
  GPY00_RS13760 - 2973552..2974397 (+) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  GPY00_RS13765 - 2974397..2974768 (+) 372 WP_000757478.1 response regulator -
  GPY00_RS13770 - 2974777..2977050 (+) 2274 WP_044127632.1 chemotaxis protein CheA -
  GPY00_RS13775 - 2977040..2977300 (+) 261 WP_001143862.1 hypothetical protein -
  GPY00_RS13780 pilL-C 2977293..2977667 (+) 375 WP_158128680.1 response regulator Machinery gene
  GPY00_RS13785 - 2977675..2978910 (+) 1236 WP_044127633.1 methyl-accepting chemotaxis protein -
  GPY00_RS13790 - 2978965..2979279 (-) 315 WP_000312389.1 multidrug efflux SMR transporter -
  GPY00_RS13795 - 2979440..2980939 (-) 1500 WP_044127634.1 deoxyribodipyrimidine photo-lyase -
  GPY00_RS13800 - 2981080..2982486 (-) 1407 WP_044127635.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13416.79 Da        Isoelectric Point: 10.1309

>NTDB_id=354807 GPY00_RS13780 WP_158128680.1 2977293..2977667(+) (pilL-C) [Vibrio cholerae strain 3541-04]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=354807 GPY00_RS13780 WP_158128680.1 2977293..2977667(+) (pilL-C) [Vibrio cholerae strain 3541-04]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCCCGTAAC
GGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

40

100

0.403