Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E2566_RS02755 Genome accession   NZ_CP038498
Coordinates   595749..597131 (-) Length   460 a.a.
NCBI ID   WP_039470544.1    Uniprot ID   A0A1M5J7R8
Organism   Pectobacterium punjabense strain SS95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590749..602131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2566_RS02725 (E2566_02760) pepP 590998..592323 (-) 1326 WP_107170825.1 Xaa-Pro aminopeptidase -
  E2566_RS02730 (E2566_02765) - 592385..592972 (-) 588 WP_107170826.1 YecA family protein -
  E2566_RS02735 (E2566_02770) zapA 593165..593494 (+) 330 WP_005971092.1 cell division protein ZapA -
  E2566_RS02745 (E2566_02780) - 593793..594434 (+) 642 WP_107170827.1 5-formyltetrahydrofolate cyclo-ligase -
  E2566_RS02750 (E2566_02785) nadR 594431..595684 (-) 1254 WP_107170828.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  E2566_RS02755 (E2566_02790) radA 595749..597131 (-) 1383 WP_039470544.1 DNA repair protein RadA Machinery gene
  E2566_RS02760 (E2566_02795) serB 597149..598126 (-) 978 WP_107170829.1 phosphoserine phosphatase -
  E2566_RS02765 (E2566_02800) - 598283..598981 (+) 699 WP_107170830.1 YtjB family periplasmic protein -
  E2566_RS02770 (E2566_02805) - 599033..599959 (-) 927 WP_107170831.1 hypothetical protein -
  E2566_RS02775 (E2566_02810) prfC 600251..601840 (+) 1590 WP_107170832.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49590.16 Da        Isoelectric Point: 7.4218

>NTDB_id=354803 E2566_RS02755 WP_039470544.1 595749..597131(-) (radA) [Pectobacterium punjabense strain SS95]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=354803 E2566_RS02755 WP_039470544.1 595749..597131(-) (radA) [Pectobacterium punjabense strain SS95]
GTGGCAAAAGCCGTCAAGCGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCTTGGAATACCATTACTGAAGTGCGCCTGGCGTCGGCATCCGTATCACGCTCCGACCGTCTCACTGGCTATG
CCGGTGAGAGTGCTGGCGTCAGCCGGGTGCAAAAGCTCTCAGAAATCAGCCTTGAAGCGCTACCCCGCTTTTCCACTGGC
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGTGTCGTTCCGGGCAGTGCGATCCTGATTGGCGGCAACCCCGGCGCAGG
TAAAAGTACGCTGCTACTGCAAACGCTCTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTTACCGGGGAAGAATCCT
TGCAGCAGGTCGCGATGCGGGCACACCGTCTTAATTTGCCGACCCAGAATCTCAACATGCTGTCAGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACACGTGGTGTTG
CTATCGTGATGGTCGGCCATGTCACCAAAGACGGTTCGCTGGCCGGGCCGAAAGTGTTAGAACACTGCATCGACTGCTCC
GTGCTGTTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGCTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAGGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTCCTCAGTCGCGGTGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACCCGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAA
TCGATGATGGCTAACCCACGCCGCGTGGCAGTCGGGCTGGAGCAAAACCGATTAGCGATCCTGCTGGCGGTATTACATCG
CCACGGCGGCTTGCAGATGTCCGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTATTATCCCTGGTCTCCAGCTTCCGCGACCGCCCACTGCCGCAGGATCTTGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCGAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCGCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5J7R8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426

Multiple sequence alignment