Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   D11S_RS05845 Genome accession   NC_013416
Coordinates   1138472..1140901 (-) Length   809 a.a.
NCBI ID   WP_032999453.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1133472..1145901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS05825 (D11S_1219) kdsB 1134708..1135481 (-) 774 WP_005546526.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D11S_RS05830 (D11S_1220) - 1135483..1135662 (-) 180 WP_005546524.1 Trm112 family protein -
  D11S_RS05835 (D11S_1221) lpxK 1135684..1136658 (-) 975 WP_005546522.1 tetraacyldisaccharide 4'-kinase -
  D11S_RS05840 (D11S_1222) msbA 1136677..1138425 (-) 1749 WP_005546521.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  D11S_RS05845 (D11S_1223) rec2 1138472..1140901 (-) 2430 WP_032999453.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D11S_RS05850 (D11S_1224) dksA 1141199..1141636 (+) 438 WP_005542366.1 RNA polymerase-binding protein DksA -
  D11S_RS05855 pcnB 1141753..1143194 (+) 1442 Protein_1115 polynucleotide adenylyltransferase PcnB -
  D11S_RS11075 (D11S_02660) folK 1143198..1143698 (+) 501 WP_005550118.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  D11S_RS05860 (D11S_1226) - 1143769..1144131 (-) 363 WP_005542369.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92219.98 Da        Isoelectric Point: 9.7458

>NTDB_id=35478 D11S_RS05845 WP_032999453.1 1138472..1140901(-) (rec2) [Aggregatibacter actinomycetemcomitans D11S-1]
MSVSLDKLAIALIFSGLTLLFLPDRFLLSWQTACYLLLLLCPLMLLAYALRQDKIKQIVMWLLILMIQSAYVHQSAISIL
TQADNLANLPKTVHREFTVEEILHQQHYQTLVIRAKLAENLPEQRIYAQWKLKQPVNPGERYAGNLRLRPLSSRLNFDGF
DRQPWYFGKHITAWAEIKSAVKLENVFSLRQTALNQALQQTENLPRQGLLLALGFGERFRLDQKTWQIYQKTNTAHLIAI
SGLHIGLAMMLGFTLARLLQFALPTRYISPTFPILCGFIFALLYSQLAGLAIPTLRAMIALAMLYAIQYWRRYWTVWQFL
LRVIALLIFIDPLMLLSTSFWLSVGAVTCLIVWYQYFPLSLLQWRGHSLANSPWRKVRYVFGLFHLQFGLLWLFTPIQLL
FFNGISLNSFIANVIAVPLYSFVLVPLVLFAVVTQGAWHSWQLANDLAEKITALLTPWQDDWLAISIPHSLWITLCLTFL
FLVALYVIYKPTKPITSTLALSRQHRFKGFHFNPERALSLPLRKSAYCVGGGLIALCCLTLISQSISRPNWQLETLDVGQ
GLATLIVKDGKGVLYDTGPSWKGGSMAQLEILPYLQRQGIDLEWLILSHDDNDHAGGAKDILAMYPHIQLTTASQKRYGS
QNTEKNDRTFCQAGKQWHWQGLHFTVLSPENIVPRAENRDSCTLLLTDGTHHILLTGDADLSVEYKILPKLGKIHVLQVG
HHGSKTSTGQALVQHIQPDIALISSGRWNPWHFPHKDVVARLQQQGSQIYNTAYSGQISLLFYNEEIKIQTARAEFSPWY
RRLIGLSTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=35478 D11S_RS05845 WP_032999453.1 1138472..1140901(-) (rec2) [Aggregatibacter actinomycetemcomitans D11S-1]
GTGAGCGTTTCGTTGGATAAGTTGGCTATAGCCCTGATTTTTAGCGGTTTAACATTATTGTTTTTGCCCGATCGCTTTTT
ATTATCGTGGCAAACGGCGTGCTATTTACTCCTCTTATTATGTCCACTCATGTTGCTTGCTTATGCCCTGCGACAGGACA
AAATCAAGCAAATAGTAATGTGGCTACTGATCTTGATGATTCAGTCCGCTTACGTCCACCAATCGGCAATTTCCATACTG
ACCCAGGCGGATAATCTTGCCAATCTGCCGAAAACCGTTCACCGCGAATTTACCGTCGAGGAAATTCTGCATCAGCAGCA
TTATCAAACCCTGGTTATTCGCGCCAAACTCGCCGAAAATCTTCCCGAACAACGTATTTACGCGCAATGGAAACTCAAGC
AACCAGTCAACCCCGGCGAACGTTACGCAGGCAATTTACGCTTGCGACCGCTTTCTTCCCGCCTGAATTTTGACGGTTTT
GACCGCCAGCCATGGTATTTCGGCAAGCACATCACCGCTTGGGCAGAGATTAAAAGTGCGGTCAAATTGGAAAACGTTTT
TTCGTTACGCCAAACCGCTCTCAATCAAGCCTTACAACAAACGGAGAATTTACCCCGACAAGGCTTGTTGCTGGCACTCG
GTTTTGGCGAACGTTTCCGCTTAGACCAAAAAACTTGGCAAATTTATCAAAAAACAAATACGGCGCATTTAATTGCCATT
TCAGGGCTGCATATCGGACTGGCGATGATGCTGGGTTTTACCTTGGCGCGTCTACTGCAATTTGCCTTGCCGACGCGTTA
CATCAGCCCGACATTTCCGATTCTGTGCGGATTCATTTTTGCGCTGTTATACAGCCAACTGGCAGGGCTTGCTATTCCGA
CTTTACGCGCCATGATTGCGTTAGCCATGCTCTACGCGATTCAGTATTGGCGACGATATTGGACGGTATGGCAATTCTTG
TTAAGAGTGATTGCCTTGCTGATTTTTATCGATCCGCTAATGTTGCTTTCCACCAGCTTTTGGTTGTCAGTGGGCGCAGT
GACCTGTCTGATTGTTTGGTATCAGTATTTTCCGTTGTCTCTATTGCAATGGCGCGGCCATTCCCTTGCCAATTCGCCGT
GGCGGAAAGTGCGGTATGTTTTCGGCTTGTTTCATTTGCAATTCGGTCTGCTCTGGCTGTTCACGCCCATTCAGCTGTTG
TTTTTTAACGGCATTTCGTTAAATAGTTTTATCGCCAATGTCATCGCCGTGCCGCTTTATAGCTTCGTTTTGGTCCCGTT
GGTGTTATTTGCCGTAGTCACCCAGGGTGCGTGGCATTCGTGGCAGCTCGCCAACGATTTGGCGGAAAAAATCACCGCAC
TTTTGACGCCTTGGCAGGATGACTGGTTGGCAATTTCCATTCCGCACAGTTTATGGATAACCCTATGTTTAACCTTTCTT
TTTTTAGTGGCGCTCTATGTTATTTATAAACCGACCAAACCGATAACATCCACTTTAGCCTTGTCAAGGCAGCACCGCTT
TAAAGGATTTCATTTTAATCCGGAACGCGCCTTAAGTTTACCGTTACGAAAAAGCGCTTATTGCGTGGGCGGCGGGCTGA
TTGCCCTGTGTTGCCTGACGTTAATTTCTCAGTCTATTTCACGCCCGAACTGGCAATTAGAAACCTTGGACGTGGGGCAA
GGGTTGGCAACTTTAATCGTGAAAGACGGCAAAGGCGTGCTTTACGATACCGGCCCGAGTTGGAAGGGCGGCAGTATGGC
ACAATTGGAAATTCTGCCTTATTTACAACGGCAAGGCATTGATTTGGAATGGCTGATATTAAGCCATGACGACAACGATC
ACGCAGGTGGTGCCAAAGATATTTTAGCAATGTATCCCCATATTCAACTGACCACCGCTTCACAAAAGCGATATGGTTCC
CAAAACACCGAAAAAAATGACCGCACTTTTTGTCAAGCCGGTAAACAATGGCATTGGCAGGGGTTGCATTTTACCGTGCT
ATCACCGGAGAATATCGTGCCCCGTGCGGAAAATCGGGATTCCTGTACGCTTTTATTAACCGATGGCACGCACCATATTT
TGCTGACGGGCGATGCGGATCTTAGCGTGGAATATAAGATCCTACCGAAACTTGGCAAAATCCATGTGTTACAAGTGGGG
CATCACGGTAGCAAAACCTCGACGGGGCAGGCATTAGTGCAACATATTCAACCGGACATTGCGCTGATTTCCAGCGGACG
CTGGAACCCATGGCATTTTCCCCATAAAGACGTGGTGGCGCGCCTGCAACAGCAAGGATCACAAATTTATAATACGGCAT
ATAGCGGGCAAATCAGTCTATTGTTCTACAATGAAGAGATCAAAATTCAGACCGCGCGCGCTGAATTTTCGCCTTGGTAT
CGCAGATTGATTGGCTTGAGCACGAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(34-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)

Competence protein (Competence)

(213-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.469

100

0.525

Multiple sequence alignment