Detailed information NTG0354772

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPY00_RS06830
• Genome accession: NZ_CP046747
• Coordinates: 1458734..1459861 (+)
• Length: 375 a.a.
• NCBI ID: WP_158128507.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3541-04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1453734..1464861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY00_RS06795	-	1454569..1455039 (-)	471	WP_000224703.1	Dps family protein	-
GPY00_RS06800	-	1455209..1455538 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPY00_RS06805	-	1455743..1456111 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPY00_RS06810	-	1456641..1456873 (+)	233	Protein_1253	hypothetical protein	-
GPY00_RS06815	-	1456990..1457619 (+)	630	WP_001888454.1	lysoplasmalogenase	-
GPY00_RS06820	-	1457668..1457934 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPY00_RS06825	rsmD	1457931..1458530 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPY00_RS06830	pilA	1458734..1459861 (+)	1128	WP_158128507.1	signal recognition particle-docking protein FtsY	Machinery gene
GPY00_RS06835	ftsE	1459910..1460584 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPY00_RS06840	ftsX	1460574..1461566 (+)	993	WP_044127696.1	permease-like cell division protein FtsX	-
GPY00_RS06845	rpoH	1461736..1462596 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPY00_RS06850	sthA	1462807..1464207 (-)	1401	WP_044127695.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 40976.78 Da
• Isoelectric Point: 4.7381

>NTDB_id=354772 GPY00_RS06830 WP_158128507.1 1458734..1459861(+) (pilA) [Vibrio cholerae strain 3541-04]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADIEAVAIQTETALTETATVEPARIVEQEKPTESFFARLKRSL
SRTKANIGVGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVE
QPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSAS
VIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPITG
ITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1128 bp

>NTDB_id=354772 GPY00_RS06830 WP_158128507.1 1458734..1459861(+) (pilA) [Vibrio cholerae strain 3541-04]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATATTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCGTTTAAAGCGCAGTTTG
AGTCGCACCAAAGCGAATATTGGCGTAGGCTTCTTTGGCCTGTTTAAAGGCAAAAAAATTGATGATGACCTGTTCGAAGA
GCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGGATACGACCAGCAAAATTATCGCTAATTTGACCGCCAAAGCTT
CTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAG
CAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCAC
GATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGGGCTGCAG
CGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAAGTGCCTGTGATCGCCCAGCATACTGGCGCCGACAGTGCCTCC
GTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGTCGCCTGCAAAA
CAAAAGTAACCTGATGGAAGAGCTGCGAAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCA
TGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGC
ATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCG
TTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGTTATTTAGCCGCG
AAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (172-371)

• SRP54-type protein, helical bundle domain (SRP54_N) (93-152)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.667	80	0.429