Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPY00_RS05790 Genome accession   NZ_CP046747
Coordinates   1251113..1252948 (-) Length   611 a.a.
NCBI ID   WP_044127377.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246113..1257948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS05770 fhuA 1246187..1248286 (-) 2100 WP_199252421.1 TonB-dependent siderophore receptor FhuA -
  GPY00_RS05775 - 1248421..1250250 (+) 1830 WP_044127342.1 ABC transporter ATP-binding protein -
  GPY00_RS05780 - 1250288..1250650 (-) 363 WP_044127343.1 hypothetical protein -
  GPY00_RS05785 - 1250821..1251120 (-) 300 WP_000807263.1 DUF3630 family protein -
  GPY00_RS05790 recQ 1251113..1252948 (-) 1836 WP_044127377.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPY00_RS05795 rarD 1253175..1254017 (+) 843 WP_001889839.1 EamA family transporter RarD -
  GPY00_RS05800 ggt 1254191..1255945 (+) 1755 WP_044127348.1 gamma-glutamyltransferase -
  GPY00_RS05805 - 1256102..1256905 (+) 804 WP_044127350.1 AraC family transcriptional regulator -
  GPY00_RS05810 - 1256980..1257648 (+) 669 WP_001004607.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69142.44 Da        Isoelectric Point: 7.1164

>NTDB_id=354765 GPY00_RS05790 WP_044127377.1 1251113..1252948(-) (recQ) [Vibrio cholerae strain 3541-04]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNIPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=354765 GPY00_RS05790 WP_044127377.1 1251113..1252948(-) (recQ) [Vibrio cholerae strain 3541-04]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCACTCTGTTACCAGATCCCTGCGTTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATTGAGCGCCTTAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGTCAGCTTAAGCAGCGTTTCCCCAATATCCCTGTGATGGCGCTGACGGCGACTGC
GGATGATGCGACGCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGACCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGCTATTTGGAAACGCAGCGTGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCAGCTGAAGCCATGATGCTCTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCACTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTTGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATTACCACCTACGGCATCGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACGCTGCAACTGACCGAAGAAGCGCGCCCCTTGCTGCGCGG
TGAGATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGATAAGTTGTCGGGCAAAA
ACTACGACAAAAAGCTATTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGACATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(33-188)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

RQC domain (RQC)

(409-517)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394