Detailed information NTG0035474

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAMTA208_RS01355
• Genome accession: NC_017188
• Coordinates: 254064..255185 (+)
• Length: 373 a.a.
• NCBI ID: WP_013350919.1
• Uniprot ID: A0A9P1NGF1
• Organism: Bacillus amyloliquefaciens TA208
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 249064..260185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMTA208_RS01335 (BAMTA208_01265)	-	249384..250379 (-)	996	WP_014469697.1	DUF5105 domain-containing protein	-
BAMTA208_RS01340 (BAMTA208_01270)	-	250497..251894 (+)	1398	WP_014469698.1	YcdB/YcdC domain-containing protein	-
BAMTA208_RS01345 (BAMTA208_01275)	-	252096..253454 (+)	1359	WP_014469699.1	YcdB/YcdC domain-containing protein	-
BAMTA208_RS01350 (BAMTA208_01280)	-	253451..253954 (-)	504	WP_014469700.1	M15 family metallopeptidase	-
BAMTA208_RS01355 (BAMTA208_01285)	rapF	254064..255185 (+)	1122	WP_013350919.1	tetratricopeptide repeat protein	Regulator
BAMTA208_RS01360 (BAMTA208_01290)	-	255299..256078 (+)	780	WP_013350920.1	glucose 1-dehydrogenase	-
BAMTA208_RS01365 (BAMTA208_01295)	-	256162..257841 (+)	1680	WP_013350921.1	glycoside hydrolase family 13 protein	-
BAMTA208_RS01370 (BAMTA208_01300)	-	257826..258320 (-)	495	WP_013350922.1	DUF4188 domain-containing protein	-
BAMTA208_RS01375 (BAMTA208_01305)	-	258321..258866 (-)	546	WP_013350923.1	PadR family transcriptional regulator	-
BAMTA208_RS01380 (BAMTA208_01310)	-	259075..260034 (+)	960	WP_013350924.1	metal ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44347.46 Da
• Isoelectric Point: 5.0035

>NTDB_id=35474 BAMTA208_RS01355 WP_013350919.1 254064..255185(+) (rapF) [Bacillus amyloliquefaciens TA208]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDHYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=35474 BAMTA208_RS01355 WP_013350919.1 254064..255185(+) (rapF) [Bacillus amyloliquefaciens TA208]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTAGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAACCTGATGGACGCCCAGCAGCATGAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCACTATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAGATACAGTGACGCCGCCGCCAGCTATGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATTAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAGCTGTTGGCCGACACTGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

3D structure

• AlphaFold DB: A0A9P1NGF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402