Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY00_RS01260 Genome accession   NZ_CP046747
Coordinates   274280..274882 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain 3541-04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 269280..279882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS01230 - 269558..270013 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  GPY00_RS01235 - 270138..271205 (+) 1068 WP_158128398.1 PLP-dependent cysteine synthase family protein -
  GPY00_RS01240 sohB 271286..272347 (-) 1062 WP_000394895.1 protease SohB -
  GPY00_RS01245 - 272506..273249 (+) 744 WP_001109956.1 YciK family oxidoreductase -
  GPY00_RS01250 - 273343..273780 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  GPY00_RS01255 - 273922..274170 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  GPY00_RS01260 recR 274280..274882 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GPY00_RS01265 - 274897..275226 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GPY00_RS01270 dnaX 275297..277375 (-) 2079 WP_044127105.1 DNA polymerase III subunit gamma/tau -
  GPY00_RS01275 apt 277394..277939 (-) 546 WP_000206217.1 adenine phosphoribosyltransferase -
  GPY00_RS01280 - 278071..278469 (-) 399 WP_042990037.1 YbaN family protein -
  GPY00_RS19455 - 278469..278600 (-) 132 WP_000013199.1 hypothetical protein -
  GPY00_RS01290 - 278770..279861 (-) 1092 WP_188006062.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=354735 GPY00_RS01260 WP_001260579.1 274280..274882(-) (recR) [Vibrio cholerae strain 3541-04]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=354735 GPY00_RS01260 WP_001260579.1 274280..274882(-) (recR) [Vibrio cholerae strain 3541-04]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGTCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TTGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44