Detailed information NTG0354703

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPW72_RS16315
• Genome accession: NZ_CP046744
• Coordinates: 2367275..2368462 (+)
• Length: 395 a.a.
• NCBI ID: WP_000136721.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3569-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2362275..2373462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW72_RS16280	-	2363112..2363582 (-)	471	WP_000224703.1	Dps family protein	-
GPW72_RS16285	-	2363752..2364081 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPW72_RS16290	-	2364286..2364654 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPW72_RS16295	-	2365157..2365414 (+)	258	WP_000479993.1	hypothetical protein	-
GPW72_RS16300	-	2365531..2366160 (+)	630	WP_000062274.1	lysoplasmalogenase	-
GPW72_RS16305	-	2366209..2366475 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPW72_RS16310	rsmD	2366472..2367071 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPW72_RS16315	pilA	2367275..2368462 (+)	1188	WP_000136721.1	signal recognition particle-docking protein FtsY	Machinery gene
GPW72_RS16320	ftsE	2368511..2369185 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPW72_RS16325	ftsX	2369175..2370167 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GPW72_RS16330	rpoH	2370337..2371197 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPW72_RS16335	sthA	2371399..2372799 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 43264.92 Da
• Isoelectric Point: 4.4258

>NTDB_id=354703 GPW72_RS16315 WP_000136721.1 2367275..2368462(+) (pilA) [Vibrio cholerae strain 3569-08]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETETETATVEPA
RIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRD
GEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQV
WGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1188 bp

>NTDB_id=354703 GPW72_RS16315 WP_000136721.1 2367275..2368462(+) (pilA) [Vibrio cholerae strain 3569-08]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCA
CGTATTGTTGAACAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATAT
TGGCGCTGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGA
TTGCCGATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGAT
GGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACAC
TGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAAC
AGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTG
TGGGGAGAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGA
AGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAG
AGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGT
ACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGA
TGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGA
AAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (111-172)

• SRP54-type protein, GTPase domain (SRP54) (192-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	86.076	0.43