Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPW86_RS17345 Genome accession   NZ_CP046742
Coordinates   2468013..2468615 (+) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain 3523-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2463013..2473615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS17315 - 2463034..2464125 (+) 1092 WP_184476219.1 response regulator -
  GPW86_RS19855 - 2464295..2464426 (+) 132 WP_000013199.1 hypothetical protein -
  GPW86_RS17325 - 2464426..2464824 (+) 399 WP_001880857.1 YbaN family protein -
  GPW86_RS17330 apt 2464956..2465501 (+) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  GPW86_RS17335 dnaX 2465520..2467598 (+) 2079 WP_123011415.1 DNA polymerase III subunit gamma/tau -
  GPW86_RS17340 - 2467669..2467998 (+) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GPW86_RS17345 recR 2468013..2468615 (+) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GPW86_RS17350 - 2468725..2468973 (-) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  GPW86_RS17355 - 2469114..2469551 (+) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  GPW86_RS17360 - 2469645..2470388 (-) 744 WP_001109956.1 YciK family oxidoreductase -
  GPW86_RS17365 sohB 2470547..2471608 (+) 1062 WP_123011492.1 protease SohB -
  GPW86_RS17370 - 2471733..2472800 (-) 1068 WP_000337333.1 PLP-dependent cysteine synthase family protein -
  GPW86_RS17375 - 2472925..2473380 (+) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=354627 GPW86_RS17345 WP_001260579.1 2468013..2468615(+) (recR) [Vibrio cholerae strain 3523-03]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=354627 GPW86_RS17345 WP_001260579.1 2468013..2468615(+) (recR) [Vibrio cholerae strain 3523-03]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTTCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TTGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTCGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCACTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAGC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGTCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCCCATTCGCTGTTGGGCCGTCATAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44