Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPW86_RS14995 Genome accession   NZ_CP046742
Coordinates   1942839..1943846 (+) Length   335 a.a.
NCBI ID   WP_123011330.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3523-03     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937839..1948846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS14960 ftsB 1937890..1938174 (+) 285 WP_033933161.1 cell division protein FtsB -
  GPW86_RS14965 ispD 1938171..1938869 (+) 699 WP_033933162.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPW86_RS14970 ispF 1938866..1939342 (+) 477 WP_033933163.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPW86_RS14975 truD 1939372..1940457 (+) 1086 WP_069212455.1 tRNA pseudouridine(13) synthase TruD -
  GPW86_RS14980 surE 1940459..1941211 (+) 753 WP_000698379.1 5'/3'-nucleotidase SurE -
  GPW86_RS14985 - 1941204..1941830 (+) 627 WP_057550676.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPW86_RS14990 nlpD 1941830..1942765 (+) 936 WP_095461793.1 murein hydrolase activator NlpD -
  GPW86_RS14995 rpoS 1942839..1943846 (+) 1008 WP_123011330.1 RNA polymerase sigma factor RpoS Regulator
  GPW86_RS15000 mutS 1943940..1946528 (-) 2589 WP_001934677.1 DNA mismatch repair protein MutS -
  GPW86_RS15005 cysM 1946796..1947683 (-) 888 WP_123011331.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38564.42 Da        Isoelectric Point: 4.3648

>NTDB_id=354612 GPW86_RS14995 WP_123011330.1 1942839..1943846(+) (rpoS) [Vibrio cholerae strain 3523-03]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGTSEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=354612 GPW86_RS14995 WP_123011330.1 1942839..1943846(+) (rpoS) [Vibrio cholerae strain 3523-03]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGACAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATCCATGTCGTCAAAGAACTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTGACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

99.104

100

0.991

Multiple sequence alignment