Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E2C04_RS21625 Genome accession   NZ_CP038462
Coordinates   3054554..3055414 (-) Length   286 a.a.
NCBI ID   WP_338088777.1    Uniprot ID   -
Organism   Nocardioides daphniae strain JCM 16608     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3049554..3060414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2C04_RS15045 (E2C04_15045) - 3050802..3052639 (+) 1838 Protein_3246 flagellar biosynthesis protein FlhA -
  E2C04_RS15050 (E2C04_15050) - 3052782..3053102 (-) 321 WP_338088847.1 sensor histidine kinase -
  E2C04_RS15055 (E2C04_15055) - 3053246..3054292 (-) 1047 Protein_3248 histidine kinase -
  E2C04_RS21625 rcrQ 3054554..3055414 (-) 861 WP_338088777.1 ABC transporter ATP-binding protein Regulator
  E2C04_RS21630 - 3055490..3055678 (-) 189 Protein_3250 ABC transporter transmembrane domain-containing protein -
  E2C04_RS21635 - 3055740..3056564 (-) 825 Protein_3251 ABC transporter ATP-binding protein -
  E2C04_RS15065 (E2C04_15065) - 3056561..3058294 (-) 1734 WP_135833216.1 ABC transporter ATP-binding protein -
  E2C04_RS15070 (E2C04_15070) pdxH 3058319..3058969 (-) 651 WP_135833217.1 pyridoxamine 5'-phosphate oxidase -
  E2C04_RS15075 (E2C04_15075) - 3059146..3060249 (+) 1104 WP_135833218.1 citrate synthase 2 -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 30634.50 Da        Isoelectric Point: 4.3010

>NTDB_id=354601 E2C04_RS21625 WP_338088777.1 3054554..3055414(-) (rcrQ) [Nocardioides daphniae strain JCM 16608]
MVNLLQSGVASAERVFELLDAPEEDDSARGSLAASGAGRGEVRFEDVSFSYDPERPLIRDLSLVARPGQTVAIVGPTGAG
KTTLVNLVMRFYEVTGGRITLDGVDIASVPRAELRGRMGMVLQDTWLFRGTIAENIAYGRPDATREQVVEAARATFVDRF
VHSLPEGYETVVDEDGGNLSAGERQLVTIARAFLTDPALLILDEATSSVDTRTELLLQQAMAALRADRTSFVIAHRLSTI
RDADVILVMEDGAIVEQGTHDELLAAGGAYARLSAAQFAAAVVGEE

Nucleotide


Download         Length: 861 bp        

>NTDB_id=354601 E2C04_RS21625 WP_338088777.1 3054554..3055414(-) (rcrQ) [Nocardioides daphniae strain JCM 16608]
ATGGTCAACCTGCTGCAGTCGGGCGTCGCCTCGGCCGAGCGGGTCTTCGAGCTGCTGGACGCCCCCGAGGAGGACGACTC
CGCCCGCGGCTCGCTGGCCGCCTCCGGCGCCGGTCGCGGCGAGGTGCGCTTCGAGGACGTCTCCTTCTCGTACGACCCCG
AGCGGCCGCTGATCCGTGACCTCTCGCTGGTCGCGCGACCCGGCCAGACGGTCGCGATCGTGGGCCCGACCGGCGCCGGC
AAGACCACCTTGGTCAACTTGGTGATGCGCTTCTACGAGGTGACCGGGGGCCGGATCACCCTCGACGGCGTCGACATCGC
CAGCGTGCCGCGCGCCGAGCTGCGCGGGCGGATGGGCATGGTCCTCCAGGACACCTGGCTCTTCCGCGGGACCATCGCAG
AGAACATCGCCTACGGCCGCCCGGACGCGACCCGCGAGCAGGTCGTCGAGGCCGCGCGAGCGACCTTCGTGGACCGCTTC
GTGCACTCGCTGCCCGAGGGCTACGAGACGGTGGTCGACGAGGACGGCGGCAACCTGTCGGCCGGCGAGCGGCAGCTCGT
CACGATCGCCCGCGCCTTCCTCACCGACCCGGCGCTGCTGATCCTCGACGAGGCGACCAGCTCGGTCGACACCCGCACCG
AGCTGCTGCTGCAGCAGGCGATGGCCGCGCTGCGCGCCGACCGCACCTCCTTCGTGATCGCGCACCGCCTCTCGACCATC
CGCGACGCCGACGTGATCCTGGTGATGGAGGACGGCGCGATCGTGGAGCAGGGCACGCACGACGAGCTGCTCGCCGCCGG
AGGGGCGTACGCCCGGCTCAGCGCCGCGCAGTTCGCTGCGGCGGTGGTGGGGGAGGAGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(59-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.755

97.203

0.542
  rcrP Streptococcus mutans UA159

37.857

97.902

0.371

Multiple sequence alignment