Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPW86_RS13140 Genome accession   NZ_CP046742
Coordinates   1574650..1576485 (+) Length   611 a.a.
NCBI ID   WP_123011489.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3523-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569650..1581485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS13120 - 1569947..1570615 (-) 669 WP_001004608.1 LysE family translocator -
  GPW86_RS13125 - 1570690..1571493 (-) 804 WP_033933047.1 AraC family transcriptional regulator -
  GPW86_RS13130 ggt 1571650..1573407 (-) 1758 WP_184476147.1 gamma-glutamyltransferase -
  GPW86_RS13135 rarD 1573581..1574423 (-) 843 WP_001889839.1 EamA family transporter RarD -
  GPW86_RS13140 recQ 1574650..1576485 (+) 1836 WP_123011489.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPW86_RS13145 - 1576478..1576789 (+) 312 WP_123011240.1 DUF3630 family protein -
  GPW86_RS13150 - 1576810..1577658 (-) 849 WP_000114970.1 MurR/RpiR family transcriptional regulator -
  GPW86_RS13160 murQ 1577889..1578791 (+) 903 WP_000687209.1 N-acetylmuramic acid 6-phosphate etherase -
  GPW86_RS13165 murP 1578815..1580259 (+) 1445 Protein_1354 PTS N-acetylmuramic acid transporter subunit IIBC -
  GPW86_RS13170 - 1580422..1581477 (+) 1056 WP_123011241.1 porin -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69156.47 Da        Isoelectric Point: 7.1164

>NTDB_id=354598 GPW86_RS13140 WP_123011489.1 1574650..1576485(+) (recQ) [Vibrio cholerae strain 3523-03]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAVRAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=354598 GPW86_RS13140 WP_123011489.1 1574650..1576485(+) (recQ) [Vibrio cholerae strain 3523-03]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCTTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTCGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGATGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAACTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGCGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCTTTGCTGCGCGG
TGAGATGAATATTGAGCTGGCGGTGCCGCGTTTAGATACCGCGGTGCGCGCCGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGACATGGCGGAGATCATGCCGACTTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(409-517)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394