Detailed information NTG0354591

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPW86_RS12110
• Genome accession: NZ_CP046742
• Coordinates: 1369097..1370320 (-)
• Length: 407 a.a.
• NCBI ID: WP_123011200.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3523-03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1364097..1375320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW86_RS12090	sthA	1364760..1366160 (+)	1401	WP_000529896.1	Si-specific NAD(P)(+) transhydrogenase	-
GPW86_RS12095	rpoH	1366362..1367222 (-)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPW86_RS12100	ftsX	1367392..1368384 (-)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GPW86_RS12105	ftsE	1368374..1369048 (-)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPW86_RS12110	pilA	1369097..1370320 (-)	1224	WP_123011200.1	signal recognition particle-docking protein FtsY	Machinery gene
GPW86_RS12115	rsmD	1370524..1371123 (+)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPW86_RS12120	-	1371120..1371386 (+)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPW86_RS12125	-	1371435..1372064 (-)	630	WP_123011201.1	lysoplasmalogenase	-
GPW86_RS12130	-	1372181..1372412 (-)	232	Protein_1180	hypothetical protein	-
GPW86_RS12135	-	1372941..1373309 (-)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPW86_RS12140	-	1373514..1373843 (+)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPW86_RS12145	-	1374013..1374483 (+)	471	WP_000224703.1	Dps family protein	-

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44588.20 Da
• Isoelectric Point: 4.3121

>NTDB_id=354591 GPW86_RS12110 WP_123011200.1 1369097..1370320(-) (pilA) [Vibrio cholerae strain 3523-03]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAETALTETETETETETETETETETETETETETET
ETETETATVEPARIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIAN
LTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGD
TFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDS
APHEIMLTLDAGTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFID
ALFSREE

Nucleotide

• Length: 1224 bp

>NTDB_id=354591 GPW86_RS12110 WP_123011200.1 1369097..1370320(-) (pilA) [Vibrio cholerae strain 3523-03]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACA
GAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCG
CTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAATATTGGCGCAGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATG
ATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGGATACGACCAGCAAAATTATCGCTAAT
TTGACCGCCAAAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGAT
TCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGG
TGGGTAAAACCACCACGATCGGTAAGCTTGCCAAACAGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGAT
ACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGTAATCAAGTGCCTGTCATCGCTCAGCATACTGG
CGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCG
CAGGTCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGC
GCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGT
AGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGTACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAAT
TCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGAC
GCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (204-403)

• SRP54-type protein, helical bundle domain (SRP54_N) (123-184)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.838	90.909	0.435