Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPW70_RS18545 Genome accession   NZ_CP046740
Coordinates   2976632..2978467 (-) Length   611 a.a.
NCBI ID   WP_025987740.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3566-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2971632..2983467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS18525 fhuA 2971707..2973806 (-) 2100 WP_019827533.1 TonB-dependent siderophore receptor FhuA -
  GPW70_RS18530 - 2973941..2975770 (+) 1830 WP_019827531.1 ABC transporter ATP-binding protein -
  GPW70_RS18535 - 2975808..2976170 (-) 363 WP_019827529.1 hypothetical protein -
  GPW70_RS18540 - 2976340..2976639 (-) 300 WP_000807266.1 DUF3630 family protein -
  GPW70_RS18545 recQ 2976632..2978467 (-) 1836 WP_025987740.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPW70_RS18550 rarD 2978694..2979536 (+) 843 WP_025987741.1 EamA family transporter RarD -
  GPW70_RS18555 ggt 2979710..2981464 (+) 1755 WP_032472844.1 gamma-glutamyltransferase -
  GPW70_RS18560 - 2981621..2982424 (+) 804 WP_000381929.1 AraC family transcriptional regulator -
  GPW70_RS18565 - 2982499..2983167 (+) 669 WP_001004609.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69128.37 Da        Isoelectric Point: 7.0045

>NTDB_id=354553 GPW70_RS18545 WP_025987740.1 2976632..2978467(-) (recQ) [Vibrio cholerae strain 3566-06]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDQPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=354553 GPW70_RS18545 WP_025987740.1 2976632..2978467(-) (recQ) [Vibrio cholerae strain 3566-06]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCAGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCGTTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTCTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCTTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCAACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGATCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATCCGTTATCTGGAGACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTCGAAATGCTCACCGAAAAGCTGTGTGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGATGCTGATGAGCGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGCCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCGA
TGGGCGCATTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGTGATCAGCCGTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCGCTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACTTACGGTATTGGTCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTTTACCAAAACATCACGCGTAACTCGACACTGCAACTGACCGAAGAAGCGCGTCCCTTGTTGCGTGG
TGAGATGAATATTGAGCTGGCGGTGCCGCGTTTAGATACCGCGGCGCGCGCCGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTATTTGCCAAACTGCGTAAGCTACGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGACATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394

Multiple sequence alignment