Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPW70_RS14125 Genome accession   NZ_CP046740
Coordinates   2022356..2022958 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain 3566-06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2017356..2027958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS14095 - 2017576..2018031 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  GPW70_RS14100 - 2018156..2019223 (+) 1068 WP_000337333.1 PLP-dependent cysteine synthase family protein -
  GPW70_RS14105 sohB 2019348..2020409 (-) 1062 WP_000394895.1 protease SohB -
  GPW70_RS14110 - 2020568..2021311 (+) 744 WP_019829838.1 YciK family oxidoreductase -
  GPW70_RS14115 - 2021406..2021843 (-) 438 WP_001884585.1 YcgN family cysteine cluster protein -
  GPW70_RS14120 - 2021981..2022229 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  GPW70_RS14125 recR 2022356..2022958 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GPW70_RS14130 - 2022973..2023302 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GPW70_RS14135 dnaX 2023373..2025451 (-) 2079 WP_032472889.1 DNA polymerase III subunit gamma/tau -
  GPW70_RS14140 apt 2025470..2026015 (-) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  GPW70_RS14145 - 2026147..2026545 (-) 399 WP_001888227.1 YbaN family protein -
  GPW70_RS19270 - 2026545..2026676 (-) 132 WP_000013199.1 hypothetical protein -
  GPW70_RS14155 - 2026846..2027937 (-) 1092 WP_025987806.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=354524 GPW70_RS14125 WP_001260579.1 2022356..2022958(-) (recR) [Vibrio cholerae strain 3566-06]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=354524 GPW70_RS14125 WP_001260579.1 2022356..2022958(-) (recR) [Vibrio cholerae strain 3566-06]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGCCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAGC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGTCGCATTGCACATGGTGTTCCCGTGGGCGGCGAGCTAGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44

Multiple sequence alignment