Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   GPW70_RS12500 Genome accession   NZ_CP046740
Coordinates   1652491..1652871 (+) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae strain 3566-06     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647491..1657871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS12475 - 1648083..1648739 (+) 657 WP_000974697.1 HEAT repeat domain-containing protein -
  GPW70_RS12480 - 1648750..1649595 (+) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  GPW70_RS12485 - 1649595..1649966 (+) 372 WP_000757478.1 PleD family two-component system response regulator -
  GPW70_RS12490 - 1649975..1652248 (+) 2274 WP_032472869.1 chemotaxis protein CheA -
  GPW70_RS12495 - 1652238..1652498 (+) 261 WP_001143862.1 hypothetical protein -
  GPW70_RS12500 pilL-C 1652491..1652871 (+) 381 WP_000045526.1 response regulator Machinery gene
  GPW70_RS12505 - 1652879..1654114 (+) 1236 WP_000621946.1 methyl-accepting chemotaxis protein -
  GPW70_RS12510 - 1654169..1654483 (-) 315 WP_000312389.1 multidrug efflux SMR transporter -
  GPW70_RS12515 - 1654629..1656143 (-) 1515 WP_001887240.1 cryptochrome/deoxyribodipyrimidine photo-lyase family protein -
  GPW70_RS12520 - 1656299..1657705 (-) 1407 WP_001887241.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=354511 GPW70_RS12500 WP_000045526.1 1652491..1652871(+) (pilL-C) [Vibrio cholerae strain 3566-06]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=354511 GPW70_RS12500 WP_000045526.1 1652491..1652871(+) (pilL-C) [Vibrio cholerae strain 3566-06]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389