Detailed information    

insolico Bioinformatically predicted

Overview

Name   eppA   Type   Machinery gene
Locus tag   METVU_RS00660 Genome accession   NC_013407
Coordinates   142107..143129 (-) Length   340 a.a.
NCBI ID   WP_012819550.1    Uniprot ID   C9REK2
Organism   Methanocaldococcus vulcanius M7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137107..148129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METVU_RS00640 (Metvu_0132) - 138979..139407 (-) 429 WP_012819546.1 class III signal peptide-containing protein -
  METVU_RS00645 (Metvu_0133) - 139447..140301 (-) 855 WP_012819547.1 hypothetical protein -
  METVU_RS00650 (Metvu_0134) - 140423..141556 (-) 1134 WP_012819548.1 DUF515 domain-containing protein -
  METVU_RS00655 (Metvu_0135) - 141665..142066 (-) 402 WP_012819549.1 class III signal peptide-containing protein -
  METVU_RS00660 (Metvu_0136) eppA 142107..143129 (-) 1023 WP_012819550.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  METVU_RS00665 (Metvu_0137) - 143134..143493 (-) 360 WP_012819551.1 cysteine-rich small domain-containing protein -
  METVU_RS00670 (Metvu_0138) - 143891..144583 (+) 693 WP_012819552.1 HDIG domain-containing metalloprotein -
  METVU_RS00685 (Metvu_0139) - 145120..145770 (+) 651 WP_012819553.1 DUF166 family protein -
  METVU_RS00690 (Metvu_0140) priS 146017..147063 (-) 1047 WP_012819554.1 DNA primase catalytic subunit PriS -
  METVU_RS00695 (Metvu_0141) - 147097..147288 (-) 192 WP_012819555.1 hypothetical protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39392.63 Da        Isoelectric Point: 8.5898

>NTDB_id=35451 METVU_RS00660 WP_012819550.1 142107..143129(-) (eppA) [Methanocaldococcus vulcanius M7]
MDLLDAVYIINFILLILASITDIKERIIPHKYVIIMAVLNLIVGYHYFGINAVIAFFTTFILCLILSIGMGGGDVKLFTA
LAPIFAYPDSFIFYVPKYILYLIAISMFIAAVFPMYKILVRYWKDIIPSACYLTMILGILYYFINIYEIPYASLIIWAYI
VISVFLSRKLPKYKEYTKKLGYLFPIYLILFYIFDKNYFIKYNLLITSLVYLGEIILISIVIYALTGVEISDKKHIEQLK
EGDILRDIIIIDGNNVEVKNLNIMKRIKFLLEHEIKGSENREIILTDGEGLSNEDIEKIKKLYMEGKIPDKLNVIKTYPF
VPFVVFGYLVVLILMKLSII

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=35451 METVU_RS00660 WP_012819550.1 142107..143129(-) (eppA) [Methanocaldococcus vulcanius M7]
GTGGATTTATTGGATGCAGTTTATATCATTAACTTCATTTTACTTATTTTAGCATCAATAACTGATATAAAGGAGAGAAT
TATTCCTCATAAGTATGTTATAATCATGGCAGTGTTGAATTTGATCGTTGGATACCATTACTTTGGTATCAATGCAGTTA
TTGCGTTTTTCACAACTTTTATACTGTGTCTTATTTTGAGCATTGGAATGGGAGGAGGAGATGTTAAATTATTTACTGCC
TTAGCTCCAATTTTTGCATATCCCGATTCATTTATATTTTATGTTCCAAAGTATATACTTTATTTAATAGCCATCAGTAT
GTTTATTGCTGCGGTTTTTCCTATGTATAAAATTTTAGTGAGATATTGGAAAGATATTATCCCTTCTGCCTGTTATCTAA
CTATGATACTTGGTATATTGTATTATTTTATAAATATCTACGAAATTCCTTATGCTTCTCTTATTATTTGGGCATATATC
GTTATTTCAGTGTTCTTATCAAGAAAACTCCCAAAATATAAAGAATACACAAAAAAGCTGGGTTATTTATTTCCAATTTA
CCTGATTTTATTTTATATTTTTGATAAAAATTATTTTATCAAGTATAACCTTTTAATAACATCCCTGGTTTATCTTGGAG
AAATTATCCTAATTTCAATAGTTATTTATGCCTTAACAGGTGTAGAAATATCAGATAAAAAGCATATTGAGCAATTAAAA
GAAGGAGATATTCTTAGAGACATTATAATAATTGATGGAAATAATGTTGAGGTAAAAAACTTAAATATAATGAAAAGAAT
AAAATTTCTATTGGAACATGAAATCAAAGGAAGTGAAAATAGAGAAATAATATTAACTGATGGAGAGGGACTTTCAAATG
AGGATATTGAAAAAATAAAAAAACTCTATATGGAAGGAAAAATTCCCGACAAACTAAATGTTATAAAGACATATCCGTTT
GTTCCGTTTGTGGTGTTTGGGTATTTAGTAGTTTTAATTCTAATGAAACTCTCGATAATATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(10-114)

Archaeal Peptidase A24 C-terminal Domain (Arc_PepC)

(208-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9REK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

53.293

98.235

0.524

Multiple sequence alignment