Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GYMC10_RS31375 Genome accession   NC_013406
Coordinates   7097878..7098372 (-) Length   164 a.a.
NCBI ID   WP_015738118.1    Uniprot ID   -
Organism   Paenibacillus sp. Y412MC10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7092878..7103372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC10_RS31360 (GYMC10_6317) - 7093539..7095308 (-) 1770 WP_015738114.1 ABC transporter substrate-binding protein -
  GYMC10_RS31365 (GYMC10_6319) - 7096036..7096710 (-) 675 WP_015738116.1 SOS response-associated peptidase -
  GYMC10_RS31370 (GYMC10_6321) rpsR 7097584..7097856 (-) 273 WP_006207333.1 30S ribosomal protein S18 -
  GYMC10_RS31375 (GYMC10_6322) ssbA 7097878..7098372 (-) 495 WP_015738118.1 single-stranded DNA-binding protein Machinery gene
  GYMC10_RS31380 (GYMC10_6323) rpsF 7098420..7098704 (-) 285 WP_009591503.1 30S ribosomal protein S6 -
  GYMC10_RS31385 (GYMC10_6324) - 7098943..7099137 (+) 195 WP_015738119.1 YjzC family protein -
  GYMC10_RS31395 (GYMC10_6325) - 7099939..7100160 (-) 222 WP_015738120.1 DUF951 domain-containing protein -
  GYMC10_RS31400 (GYMC10_6326) - 7100226..7101128 (-) 903 WP_015738121.1 mechanosensitive ion channel family protein -
  GYMC10_RS31405 (GYMC10_6327) - 7101144..7101398 (-) 255 WP_015738122.1 DUF3343 domain-containing protein -
  GYMC10_RS31410 (GYMC10_6328) yyaC 7101659..7102264 (+) 606 WP_015738123.1 spore protease YyaC -
  GYMC10_RS31415 (GYMC10_6329) - 7102221..7102739 (-) 519 WP_015738124.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18133.82 Da        Isoelectric Point: 4.8536

>NTDB_id=35450 GYMC10_RS31375 WP_015738118.1 7097878..7098372(-) (ssbA) [Paenibacillus sp. Y412MC10]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRETSGGGGNREESSFNGGSNGNSGGGNRGNNNYSRNNNQDPFSDEGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=35450 GYMC10_RS31375 WP_015738118.1 7097878..7098372(-) (ssbA) [Paenibacillus sp. Y412MC10]
TTGTTGAACCGTGTCATTTTGATTGGCCGACTGACTAAGGATCCCGAGCTGCGATATACTCCTTCAGGTGTTGCTGTAAC
GCAATTTACACTTGCTGTTGATCGTCCGTTTACCGGACAAGGCGGGGAGCGCGAAGCGGATTTCATTCCGGTCGTGACCT
GGAGACAGCTTGCGGAGACTTGTGCAAACTATCTGCGCAAAGGCCGTCTGACGGCTGTAGAAGGGCGCATTCAAGTGCGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTCACCGAAGTCATTGCCGATAATGTTCGCTTCTTGGAGTCAAACCG
TGAAACAAGCGGTGGCGGAGGAAATCGTGAGGAATCATCGTTTAACGGAGGAAGCAACGGCAATAGCGGTGGCGGAAACC
GGGGGAACAATAACTACTCGCGAAACAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATTTCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.537
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment