Detailed information NTG0354475

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPW70_RS05555
• Genome accession: NZ_CP046740
• Coordinates: 129141..130310 (+)
• Length: 389 a.a.
• NCBI ID: WP_158106825.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3566-06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124141..135310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW70_RS05520	-	124977..125447 (-)	471	WP_000224703.1	Dps family protein	-
GPW70_RS05525	-	125617..125946 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPW70_RS05530	-	126151..126519 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPW70_RS05535	-	127049..127280 (+)	232	Protein_116	hypothetical protein	-
GPW70_RS05540	-	127397..128026 (+)	630	WP_001888454.1	lysoplasmalogenase	-
GPW70_RS05545	-	128075..128341 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPW70_RS05550	rsmD	128338..128937 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPW70_RS05555	pilA	129141..130310 (+)	1170	WP_158106825.1	signal recognition particle-docking protein FtsY	Machinery gene
GPW70_RS05560	ftsE	130359..131033 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPW70_RS05565	ftsX	131023..132015 (+)	993	WP_032472898.1	permease-like cell division protein FtsX	-
GPW70_RS05570	rpoH	132185..133045 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPW70_RS05575	sthA	133256..134656 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 42606.35 Da
• Isoelectric Point: 4.4974

>NTDB_id=354475 GPW70_RS05555 WP_158106825.1 129141..130310(+) (pilA) [Vibrio cholerae strain 3566-06]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADIEAVAIQTETALTETETETETETETETETATVEPARIVEQE
KPTESFFARLKRSLSRTKANIGVGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRDGEALYG
LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQ
VPVIAQHTGADSASVIYDAIEAAKARGMDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI
SQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1170 bp

>NTDB_id=354475 GPW70_RS05555 WP_158106825.1 129141..130310(+) (pilA) [Vibrio cholerae strain 3566-06]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATATTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAA
AAACCGACCGAAAGTTTCTTTGCGCGTTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAATATTGGCGTAGGCTTCTTTGG
CCTGTTTAAAGGCAAAAAAATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGG
ATACGACCAGCAAAATTATCGCTAATTTGACCGCCAAAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGT
CTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTTATCGACACTGAGAAAAAACCTTACGT
GATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCA
AGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAA
GTGCCTGTGATCGCCCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGG
GATGGACGTGGTGATTGCGGATACCGCAGGTCGCCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGAAAGATTGTGC
GCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATC
AGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGG
CGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTC
CATTTGCAACACAAGAGTTTATCGACGCGTTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (186-385)

• SRP54-type protein, helical bundle domain (SRP54_N) (107-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.333	77.121	0.411