Detailed information NTG0354440

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPW74_RS09050
• Genome accession: NZ_CP046737
• Coordinates: 2019116..2020303 (-)
• Length: 395 a.a.
• NCBI ID: WP_076024892.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2015V-1126
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2014116..2025303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW74_RS09030	sthA	2014875..2016275 (+)	1401	WP_123012544.1	Si-specific NAD(P)(+) transhydrogenase	-
GPW74_RS09035	rpoH	2016381..2017241 (-)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPW74_RS09040	ftsX	2017411..2018403 (-)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GPW74_RS09045	ftsE	2018393..2019067 (-)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPW74_RS09050	pilA	2019116..2020303 (-)	1188	WP_076024892.1	signal recognition particle-docking protein FtsY	Machinery gene
GPW74_RS09055	rsmD	2020507..2021106 (+)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPW74_RS09060	-	2021103..2021369 (+)	267	WP_114741955.1	DUF1145 domain-containing protein	-
GPW74_RS09065	-	2021417..2022046 (-)	630	WP_000062272.1	lysoplasmalogenase	-
GPW74_RS18855	-	2022163..2022421 (-)	259	Protein_1757	hypothetical protein	-
GPW74_RS09070	-	2022924..2023292 (-)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPW74_RS09075	-	2023497..2023826 (+)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPW74_RS09080	-	2023996..2024466 (+)	471	WP_000224703.1	Dps family protein	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 43206.88 Da
• Isoelectric Point: 4.4258

>NTDB_id=354440 GPW74_RS09050 WP_076024892.1 2019116..2020303(-) (pilA) [Vibrio cholerae strain 2015V-1126]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAETALTETETETETETETETETETETETATVEPA
RIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRD
GEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQV
WGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1188 bp

>NTDB_id=354440 GPW74_RS09050 WP_076024892.1 2019116..2020303(-) (pilA) [Vibrio cholerae strain 2015V-1126]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCA
CGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAATAT
TGGCGCAGGCTTCTTTGGCCTGTTTAAAGGCAAAAAAATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGA
TTGCCGATGTCGGCATGGATACGACCAGCAAAATTATCGCTAATTTGACCGCGAAAGCTTCTCGTCAGCAACTGCGTGAT
GGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACAC
TGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACCACCACGATCGGTAAACTGGCTAAAC
AGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTG
TGGGGAGAGCGCAATCAAGTGCCTGTCATCGCCCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGA
AGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAG
AGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCGGGT
ACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACAGGCATTACCTTAACTAAGCTTGA
TGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGA
AAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (111-172)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.706	86.076	0.428