Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GYMC10_RS21260 Genome accession   NC_013406
Coordinates   4894544..4895497 (-) Length   317 a.a.
NCBI ID   WP_015736422.1    Uniprot ID   -
Organism   Paenibacillus sp. Y412MC10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4889544..4900497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC10_RS21240 (GYMC10_4299) - 4890124..4891548 (-) 1425 WP_015736418.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  GYMC10_RS21245 (GYMC10_4300) - 4891735..4892706 (-) 972 WP_041622029.1 siderophore ABC transporter substrate-binding protein -
  GYMC10_RS21250 (GYMC10_4301) - 4892852..4893610 (-) 759 WP_015736420.1 ABC transporter ATP-binding protein -
  GYMC10_RS21255 (GYMC10_4302) - 4893607..4894554 (-) 948 WP_015736421.1 iron chelate uptake ABC transporter family permease subunit -
  GYMC10_RS21260 (GYMC10_4303) ceuB 4894544..4895497 (-) 954 WP_015736422.1 ABC transporter permease Machinery gene
  GYMC10_RS21265 (GYMC10_4304) - 4896020..4896622 (+) 603 WP_009589776.1 nitroreductase family protein -
  GYMC10_RS21270 (GYMC10_4305) - 4896993..4897595 (+) 603 WP_015736423.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  GYMC10_RS31985 (GYMC10_4306) - 4897669..4897764 (-) 96 WP_015736424.1 hypothetical protein -
  GYMC10_RS21275 (GYMC10_4307) - 4897881..4898579 (-) 699 WP_015736425.1 nucleotidyltransferase domain-containing protein -
  GYMC10_RS21280 (GYMC10_4308) - 4898722..4899444 (+) 723 WP_015736426.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.36 Da        Isoelectric Point: 9.9368

>NTDB_id=35437 GYMC10_RS21260 WP_015736422.1 4894544..4895497(-) (ceuB) [Paenibacillus sp. Y412MC10]
MKIRYLFAAVVVLSIISLFIGVKDISPLELFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSVATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYLSIPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=35437 GYMC10_RS21260 WP_015736422.1 4894544..4895497(-) (ceuB) [Paenibacillus sp. Y412MC10]
ATGAAGATTAGATACTTATTCGCAGCCGTTGTGGTACTCTCCATAATCTCGTTATTTATTGGAGTTAAAGATATCTCGCC
ACTGGAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCACGGCTTGTCAGCCTCATCT
TGGCGGGTGTCAGCATGAGTATCTGTGGATTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTATCGCCGACGACGGCG
GGCACCATGGACTCCGCCAGATTGGGGATCTTGGTTGCCATGCTCGTCTTTACGACAAGCGGCCCGCTTATCAAAATGCT
CGTGGCATTCGTATTCGCGCTGGCAGGAACCTTTATCTTCATGAAGATACTGGATCGGATCAAGTTCAAGGACGCGATCT
TCATCCCGCTGGTAGGGCTTATGTTCGGTAATATCGTCAGCTCGGTCGCGACCTTCTTTGCCTACAAATATGATCTTATA
CAGAATATGTCGGCTTGGCTGCAGGGCGATTTCTCCATGATCATGAAGGGCCAATATGAAATGCTGTATCTCAGTATCCC
GCTTGTGATTCTGGCTTACCTGTTTGCCAACAAGTTTACGGTAGCCGGAATGGGAGAGGAATTCGCAACCAACCTGGGAC
TTCATTATCGGCGAGTCGTGAACCTGGGATTGGTCATCGTTGCGCTGGTTACGGCTTCCGTTGTGCTGACCGTCGGCGTG
ATTCCGTTCCTTGGTCTGATCATACCTAATATTGTCAGTCTGTACTTAGGGGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGTTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTTGGCCGGATCATCATTTATCCCTACGAAATTCCGATTA
GTCTGACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.968

99.369

0.536

Multiple sequence alignment