Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GO593_RS16055 Genome accession   NZ_CP046654
Coordinates   3350213..3350809 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3345213..3355809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO593_RS16025 (GO593_16025) - 3345393..3345767 (+) 375 WP_000800035.1 TonB C-terminal domain-containing protein -
  GO593_RS16030 (GO593_16030) - 3345940..3346707 (+) 768 WP_000934183.1 class I SAM-dependent methyltransferase -
  GO593_RS16035 (GO593_16035) - 3346788..3347873 (-) 1086 WP_000825836.1 alpha/beta fold hydrolase -
  GO593_RS16040 (GO593_16040) - 3348007..3349194 (+) 1188 WP_001076388.1 O-succinylhomoserine sulfhydrylase -
  GO593_RS16045 (GO593_16045) - 3349372..3349608 (+) 237 WP_000917295.1 hypothetical protein -
  GO593_RS16050 (GO593_16050) - 3349874..3350203 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  GO593_RS16055 (GO593_16055) recR 3350213..3350809 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  GO593_RS16060 (GO593_16060) - 3351115..3351822 (+) 708 Protein_3123 ribonuclease D -
  GO593_RS16065 (GO593_16065) prmB 3351836..3352840 (+) 1005 WP_000441019.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  GO593_RS16070 (GO593_16070) aroC 3352853..3353944 (+) 1092 WP_000918444.1 chorismate synthase -
  GO593_RS16075 (GO593_16075) - 3354041..3355270 (-) 1230 WP_000775755.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=354218 GO593_RS16055 WP_000490551.1 3350213..3350809(+) (recR) [Acinetobacter baumannii strain ATCC 19606]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=354218 GO593_RS16055 WP_000490551.1 3350213..3350809(+) (recR) [Acinetobacter baumannii strain ATCC 19606]
GTGTTTAGCGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTCTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424