Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GPA00_RS03220 Genome accession   NZ_CP046629
Coordinates   637975..638730 (+) Length   251 a.a.
NCBI ID   WP_027968256.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 632975..643730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS03200 (GPA00_03200) mreD 633539..634045 (+) 507 WP_033152117.1 rod shape-determining protein MreD -
  GPA00_RS03205 (GPA00_03205) - 634147..635520 (+) 1374 WP_157327503.1 CHAP domain-containing protein -
  GPA00_RS03210 (GPA00_03210) - 635652..636623 (+) 972 WP_003067288.1 ribose-phosphate diphosphokinase -
  GPA00_RS03215 (GPA00_03215) - 636810..637985 (+) 1176 WP_074629253.1 pyridoxal phosphate-dependent aminotransferase -
  GPA00_RS03220 (GPA00_03220) recO 637975..638730 (+) 756 WP_027968256.1 DNA repair protein RecO Machinery gene
  GPA00_RS03225 (GPA00_03225) plsX 638866..639861 (+) 996 WP_024344780.1 phosphate acyltransferase PlsX -
  GPA00_RS03230 (GPA00_03230) - 639879..640121 (+) 243 WP_003067281.1 acyl carrier protein -
  GPA00_RS03235 (GPA00_03235) purC 640246..640956 (+) 711 WP_021141386.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29226.58 Da        Isoelectric Point: 6.4981

>NTDB_id=354073 GPA00_RS03220 WP_027968256.1 637975..638730(+) (recO) [Streptococcus equinus strain CNU G6]
MQTKETYGLVLYNRNYREDDKLVKIFTETDGKHMFFVRHAGKSRFNSVIQPLTIAKFIVKINDNGLSFIEDYKEVASFKE
INADLFKLSYASYVTSLADAAVPDNVADSQLFAFLNKTLSLMEEGLDYEILTNIFEIQILERFGISLNLHECAFCHRVGL
PFDFSHKYTGLLCPEHYAKDEHRSHVDPNMLYLLDRFQAIQFDELKTISVKPEMKRKLRLFIDDIYDNYVGVRLKSKKFI
DDLGSWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=354073 GPA00_RS03220 WP_027968256.1 637975..638730(+) (recO) [Streptococcus equinus strain CNU G6]
ATGCAAACTAAAGAAACTTATGGTCTTGTCCTCTATAATCGCAATTATCGCGAGGATGACAAACTAGTTAAGATTTTTAC
AGAAACAGATGGCAAGCATATGTTTTTTGTGAGACATGCGGGAAAATCTCGTTTTAATTCTGTGATTCAGCCGTTGACCA
TTGCTAAATTTATTGTAAAGATTAACGACAATGGTTTGTCGTTCATCGAGGATTATAAGGAAGTGGCTTCGTTTAAGGAA
ATCAATGCTGATTTATTTAAGTTGTCATATGCTTCTTATGTAACTTCTTTGGCTGATGCTGCTGTACCTGATAATGTGGC
TGATTCGCAGTTGTTTGCTTTTTTGAACAAGACTTTATCTTTGATGGAAGAGGGTCTTGATTATGAAATCTTGACGAATA
TCTTTGAGATTCAGATTTTGGAGCGCTTTGGTATTAGTTTGAATCTGCATGAATGTGCATTTTGTCATCGTGTAGGACTT
CCTTTTGATTTTTCTCATAAGTATACTGGCTTGCTTTGCCCAGAGCATTATGCAAAAGATGAGCATCGAAGTCACGTTGA
TCCGAATATGCTTTATCTCCTTGATCGTTTTCAAGCCATTCAATTTGATGAGTTAAAGACGATTTCGGTTAAACCTGAAA
TGAAACGAAAACTGCGTTTATTTATCGATGATATCTATGATAACTATGTCGGTGTTCGATTGAAGAGTAAGAAGTTCATC
GATGATTTAGGTTCTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.745

100

0.637

Multiple sequence alignment