Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   GPA00_RS02100 Genome accession   NZ_CP046629
Coordinates   416201..416434 (-) Length   77 a.a.
NCBI ID   WP_094140010.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 411201..421434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02070 (GPA00_02070) - 412319..413611 (-) 1293 WP_157327344.1 glycosyltransferase family 2 protein -
  GPA00_RS02075 (GPA00_02075) - 413614..413913 (-) 300 WP_157327346.1 DUF3884 family protein -
  GPA00_RS02080 (GPA00_02080) - 413939..414121 (-) 183 WP_157327348.1 hypothetical protein -
  GPA00_RS02085 (GPA00_02085) - 414187..414411 (-) 225 WP_039697856.1 helix-turn-helix domain-containing protein -
  GPA00_RS02090 (GPA00_02090) - 414401..415402 (-) 1002 WP_157327350.1 thioredoxin fold domain-containing protein -
  GPA00_RS02095 (GPA00_02095) - 415993..416181 (-) 189 WP_006531876.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  GPA00_RS02100 (GPA00_02100) cipB 416201..416434 (-) 234 WP_094140010.1 Blp family class II bacteriocin Regulator
  GPA00_RS02105 (GPA00_02105) comA/nlmT 416670..418817 (+) 2148 WP_157327352.1 peptide cleavage/export ABC transporter Regulator
  GPA00_RS02110 (GPA00_02110) - 418827..420206 (+) 1380 WP_157327354.1 bacteriocin secretion accessory protein -
  GPA00_RS02115 (GPA00_02115) - 420232..420411 (-) 180 WP_039691373.1 hypothetical protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 7535.58 Da        Isoelectric Point: 4.2971

>NTDB_id=354059 GPA00_RS02100 WP_094140010.1 416201..416434(-) (cipB) [Streptococcus equinus strain CNU G6]
MNTKTFEQFDVMTEAELSTVEGGNKCVNAIFGGALTGAGSGFVGGMATLGVTSIPGAFVGAHFGAIAGGLYCVGASL

Nucleotide


Download         Length: 234 bp        

>NTDB_id=354059 GPA00_RS02100 WP_094140010.1 416201..416434(-) (cipB) [Streptococcus equinus strain CNU G6]
ATGAATACAAAAACTTTTGAACAATTTGATGTAATGACAGAGGCAGAGCTTTCAACTGTTGAAGGTGGGAACAAATGTGT
TAATGCAATTTTTGGTGGCGCATTAACAGGTGCAGGATCAGGATTTGTAGGTGGTATGGCAACGCTTGGTGTTACTTCAA
TTCCAGGAGCATTTGTTGGAGCCCATTTTGGAGCAATAGCTGGTGGCTTATATTGTGTAGGTGCTAGTCTTTGA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

50

75.325

0.377