Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GO596_RS09085 Genome accession   NZ_CP046628
Coordinates   1835817..1839062 (-) Length   1081 a.a.
NCBI ID   WP_157339662.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830817..1844062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS09075 (GO596_09075) - 1830977..1832122 (+) 1146 WP_024344343.1 cobalamin-independent methionine synthase II family protein -
  GO596_RS09080 (GO596_09080) rexA 1832201..1835827 (-) 3627 WP_157339661.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GO596_RS09085 (GO596_09085) rexB 1835817..1839062 (-) 3246 WP_157339662.1 ATP-dependent nuclease subunit B Machinery gene
  GO596_RS09090 (GO596_09090) pheT 1839201..1841606 (-) 2406 WP_157339663.1 phenylalanine--tRNA ligase subunit beta -
  GO596_RS09095 (GO596_09095) - 1841676..1842200 (-) 525 WP_157339664.1 GNAT family N-acetyltransferase -
  GO596_RS09100 (GO596_09100) pheS 1842232..1843275 (-) 1044 WP_027967999.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 1081 a.a.        Molecular weight: 124809.86 Da        Isoelectric Point: 5.3992

>NTDB_id=354031 GO596_RS09085 WP_157339662.1 1835817..1839062(-) (rexB) [Streptococcus equinus strain CNU 77-23]
MKLLYTDIQFDMTEILTKEAIEQAKANKRVFYIAPNSLSFEKERAVLELLPEQASFAITITRFAQMARYFVLNESQTTET
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKSANMTVLDLNGLQSEEKQEDLVKIFLAVNDILLA
NQYDTQSKIAFFAKQVESGHLDKALENVALVIDGFTRFSAEEEHLVSLLEQKCAQVIIGTYSSQKAYKATFTAGNVYQAS
LDFLRSLAMKFQAQPHYVESSQASHEAFAKLSKLFEAKHDFTTAELTLTDDDKKHYAIWDVINQKEEVEHVAKAIRHKLY
EGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVINLLKTGLYGQFKQ
DDLDLFEQYLIYADIKGQSKFAKEFTVNYKGKEHLAFINQMREQIMVPLLTLFKAQKQLGSSLLEKLMTFLRAISLPDNL
EGMVATFPEIEQERHEQVWRTFTGILSQFQTIFGKEKLSLDECLSLVRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQSHFPKIAQNRSLISDEERAKVNENTDENQRFDVISRENIKKNHFAALSLFNAATEELVLSLPQIVNESEDK
ESSYLAELASFGVPVVKKGRNRLSANLEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLETQGIDL
PLIKDNMQTKPVASEVIETRFPSDKPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDE
SDQPFDTKLNQAIQKTNSEDEFKFVYEEDEESRYSLTVLEDIARSTASILKNDAQIQVENEEEPFELMIANAVRIRGIID
RVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKGRSESDKIFGAMYLHMQEPKVDLSAVATTDKILE
NLSKELRYRGLFLDEEKGYLSNGNYHLNDSVYTQEELDILLAYNQKLFIQAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEANRHMPYARKWYKLPRKERRQGFLSLMLKEEEEKDEL

Nucleotide


Download         Length: 3246 bp        

>NTDB_id=354031 GO596_RS09085 WP_157339662.1 1835817..1839062(-) (rexB) [Streptococcus equinus strain CNU 77-23]
ATGAAATTATTATATACAGATATTCAGTTTGATATGACTGAGATTTTAACGAAAGAGGCAATTGAACAAGCAAAAGCTAA
TAAGCGAGTTTTTTACATTGCCCCAAACTCTTTGTCTTTTGAAAAGGAAAGAGCGGTTTTAGAGCTTTTGCCTGAGCAGG
CTTCTTTTGCAATTACTATTACGCGTTTTGCTCAGATGGCGCGCTATTTTGTCTTAAATGAGTCTCAGACAACAGAAACA
ATTGACGATAATGGTCTAGCCATGATTTTTTATCGTGCGCTTTCACATTTTTCTGATACAGATTTGAAAGTCTTTGGACG
TTTAAAACAGGATACCAATTTTATCAAACAATTGGTTGATTTGTATAAAGAGTTGAAGTCGGCTAATATGACTGTGCTTG
ATTTGAATGGGCTTCAATCTGAGGAAAAGCAAGAGGATTTGGTGAAAATTTTCTTGGCTGTCAATGATATTTTATTAGCC
AATCAGTATGATACCCAGTCAAAAATTGCTTTTTTTGCTAAGCAAGTTGAATCAGGGCACTTGGACAAGGCTCTTGAAAA
TGTAGCACTTGTCATTGATGGTTTTACGCGTTTTTCAGCAGAAGAAGAGCACTTGGTTAGCTTACTTGAGCAAAAATGTG
CGCAAGTTATTATCGGAACATACAGCAGCCAAAAGGCTTATAAGGCAACCTTTACAGCAGGAAATGTTTATCAAGCTAGT
TTGGATTTCTTGCGCTCTTTAGCGATGAAATTTCAAGCGCAGCCACATTATGTTGAGAGTTCTCAAGCATCACACGAAGC
TTTTGCTAAGTTATCAAAATTATTTGAAGCTAAGCATGATTTTACAACAGCAGAGTTAACCTTGACAGATGATGATAAGA
AACACTACGCTATCTGGGATGTTATCAACCAAAAAGAAGAAGTTGAACATGTGGCTAAGGCGATTCGTCATAAGCTTTAT
GAGGGTTACCGTTATAAAGATATCTTGGTTCTTTTAGGTGATGTAGATAGTTATCGTCTTCAAATTGGAAAGATTTTTGA
CAAGTATGAAATTCCATATTATTTTGGGAAAGCAGAGTCGATGAGTGATCACCCGTTGGTGCATTTTATTGATTCTTTGG
AGCGCGTGAAACGTTATCGTTTTCGAACAGAAGATGTTATCAATCTCTTGAAGACGGGGCTTTATGGACAATTCAAGCAA
GATGATTTAGATCTTTTTGAGCAATATTTGATTTATGCTGATATTAAAGGACAAAGCAAGTTTGCAAAGGAATTTACGGT
TAACTATAAAGGAAAAGAGCACTTAGCTTTTATAAATCAAATGCGCGAGCAAATCATGGTGCCTTTGCTTACGCTCTTTA
AAGCACAAAAGCAGCTTGGTTCAAGTTTGCTTGAAAAATTAATGACTTTCTTGCGTGCTATTAGTCTTCCAGACAATCTT
GAAGGCATGGTTGCCACTTTCCCAGAGATTGAGCAAGAAAGACACGAGCAAGTTTGGCGAACATTTACAGGAATTTTAAG
CCAATTCCAAACGATTTTCGGTAAAGAAAAATTATCTTTGGATGAATGTTTATCGCTGGTCAGAAGTGGTATGCTTGCTG
CTCAGTACCGTGTTGTGCCTGCGACTGTAGACGTTGTTTCGGTAAAATCGTATGACCTTGTCGAACCACATACGAATAAA
TTTGTTTTTGCACTCGGTATGACGCAGTCGCATTTTCCTAAAATTGCCCAAAACCGCAGTTTAATCTCAGACGAAGAACG
TGCCAAGGTTAACGAAAACACAGATGAAAACCAACGTTTTGATGTCATTAGTCGTGAGAATATCAAGAAAAATCACTTTG
CAGCCCTTTCGCTTTTCAATGCTGCAACAGAAGAATTGGTTCTTAGTTTGCCACAAATTGTTAACGAATCAGAAGACAAA
GAATCATCATATCTTGCTGAGCTAGCTAGCTTTGGTGTGCCTGTTGTGAAAAAAGGTCGCAATCGTTTATCAGCAAATCT
TGAAGACATCGGAAACTACAAGGCGCTGTTGTCTCGAGTGATTGAGGTTAATCGTTTGGCGATTGAAGAAGAACGTGAGC
TCAGTAAAGAAGAGCAAACATTTTGGTCTGTTGCTGTTCGATATCTTCGAAAAAAACTTGAAACACAAGGTATTGATCTG
CCATTGATTAAAGATAATATGCAGACTAAGCCAGTAGCTTCTGAAGTTATTGAGACTCGTTTTCCAAGTGATAAGCCAAT
TAATTTGTCATCATCAGCTGTGACAACTTTCTATAATAACCAGTACAAGTATTTCTTGCAGTATGTTCTTGGCTTGCAAG
AAGTTGAAACGATTCATCCGGATGCTAGAAACCACGGAACATATCTTCACCGTGTCTTTGAACTTGTCATGAAAGATGAG
TCTGATCAGCCATTTGATACCAAGTTAAATCAAGCTATTCAAAAGACTAATTCTGAAGATGAGTTTAAATTTGTCTATGA
AGAAGATGAAGAAAGTCGTTATTCTCTGACCGTTTTGGAAGATATTGCAAGAAGCACGGCAAGCATTTTGAAAAATGATG
CTCAGATTCAAGTTGAAAACGAGGAAGAGCCGTTTGAATTGATGATTGCAAATGCAGTGCGTATTCGAGGTATTATTGAC
CGTGTTGACCGCTTGAGCGATGGCAGTCTTGGTGTGGTTGACTATAAATCTAGTCACAATACTTTTGATATTCAGAAATT
TTATAATGGTTTGAATCCGCAATTGGTGACATATATGCAAGCTTTGCGTGATAAAAAAGGAAGAAGCGAGTCAGATAAAA
TTTTTGGCGCCATGTATCTTCATATGCAAGAACCCAAAGTTGATTTGTCAGCGGTAGCAACGACAGATAAAATTTTGGAG
AATTTGTCAAAAGAGCTACGCTATCGTGGCCTATTCTTGGACGAAGAAAAAGGCTACTTGTCAAATGGAAATTATCATTT
AAATGATTCTGTTTACACTCAAGAAGAGCTCGATATTCTTCTTGCTTACAACCAAAAATTATTTATTCAAGCAGCAGAGC
AAATCAAAAAAGGACATTTTCTGATTAATCCATACAGCGAAGATGGCAAGTCTGTCCAAGGTGACCAGCTAAAAGCTATC
ACACGCTTTGAAGCCAATCGCCACATGCCATACGCGAGAAAATGGTATAAACTACCAAGAAAAGAAAGACGTCAAGGCTT
TTTGAGTCTAATGCTAAAAGAAGAGGAGGAAAAAGATGAACTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

45.014

99.26

0.447