Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   GO596_RS03975 Genome accession   NZ_CP046628
Coordinates   790955..792265 (+) Length   436 a.a.
NCBI ID   WP_157339239.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 785955..797265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03945 (GO596_03945) - 787346..787525 (+) 180 WP_039691373.1 hypothetical protein -
  GO596_RS03950 (GO596_03950) - 787572..787877 (-) 306 Protein_704 cysteine peptidase family C39 domain-containing protein -
  GO596_RS09535 - 788112..788222 (+) 111 WP_232516872.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  GO596_RS03955 (GO596_03955) - 788189..788350 (+) 162 WP_232516873.1 hypothetical protein -
  GO596_RS03960 (GO596_03960) - 788416..788727 (+) 312 WP_061408660.1 hypothetical protein -
  GO596_RS03965 (GO596_03965) - 788917..789528 (+) 612 WP_157339237.1 thioredoxin family protein -
  GO596_RS03970 (GO596_03970) comE/comE1 790219..790950 (+) 732 WP_157339238.1 response regulator transcription factor Regulator
  GO596_RS03975 (GO596_03975) comD/comD1 790955..792265 (+) 1311 WP_157339239.1 sensor histidine kinase Regulator
  GO596_RS09440 comC/comC1 792286..792432 (-) 147 WP_169741101.1 hypothetical protein Regulator
  GO596_RS03980 (GO596_03980) - 792620..792916 (+) 297 WP_157339240.1 DUF3884 family protein -
  GO596_RS03985 (GO596_03985) - 792936..793241 (+) 306 WP_024344359.1 bacteriocin immunity protein -
  GO596_RS03990 (GO596_03990) - 793273..793566 (+) 294 WP_157339241.1 bacteriocin immunity protein -
  GO596_RS03995 (GO596_03995) comD/comD3 793914..795104 (+) 1191 WP_232516874.1 sensor histidine kinase Regulator
  GO596_RS04000 (GO596_04000) comD/comD3 795094..796467 (+) 1374 WP_157339242.1 GHKL domain-containing protein Regulator

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 50415.94 Da        Isoelectric Point: 5.3080

>NTDB_id=353983 GO596_RS03975 WP_157339239.1 790955..792265(+) (comD/comD1) [Streptococcus equinus strain CNU 77-23]
MIDYLVLSLIVNSFILFIYSQVRGDKLTLWEILIAIIVFVGVDHTSFYFIVCNFIILILLSYFKDRELPVSLHVFYGVFP
WLVEGVFRRLIGFFIIPLIGLKHQDVGGNNIIFMCVELASLNLYMLLVKISKFDFQKFIEIISVNRLRKFLITTDVTMVI
FYVAIEFLTGMEAYGGVNNLIYRQWLVVIYFIFFILMLFYMNRSYQNKLEKEIASAREQELRSLSAYSKQIEGLYEELRA
FRHDYANILASLKEGIEQNDMGIVRHIYDSVLTDSADFIQNSKFDIGRLANIDDDAIKSLLSAKFLEAEANHIEVNLEVK
DKIGAPAMPLLDYIRILAILCDNAIEAALEAENPAITIACFYQDDDYVLIVDNSTKEENIPVNLIYQKDYSSKGYGRGIG
LKTIHQMMRKYPDLIVQTDSKNYHFCQTIRIKKAFD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=353983 GO596_RS03975 WP_157339239.1 790955..792265(+) (comD/comD1) [Streptococcus equinus strain CNU 77-23]
ATGATTGATTACCTAGTACTCTCTTTGATAGTAAACTCGTTTATTCTCTTTATATATTCTCAAGTCAGAGGTGATAAATT
AACTCTTTGGGAAATATTGATAGCAATCATTGTTTTTGTAGGAGTTGATCATACTTCCTTTTACTTTATAGTATGCAATT
TTATTATTTTAATACTGCTATCTTATTTTAAAGATAGAGAATTACCAGTATCTCTTCATGTATTTTATGGGGTTTTCCCA
TGGCTAGTTGAAGGGGTTTTTAGACGTTTGATAGGTTTCTTTATCATTCCGCTTATAGGTTTAAAACATCAGGATGTTGG
TGGGAATAATATAATTTTTATGTGCGTTGAGTTAGCGTCTCTAAACCTTTATATGTTACTAGTAAAAATTTCCAAATTTG
ATTTTCAAAAGTTTATAGAGATAATTAGTGTTAATAGATTAAGGAAATTTCTCATTACTACTGATGTAACAATGGTTATT
TTTTATGTGGCTATTGAATTTTTGACAGGTATGGAGGCTTATGGAGGAGTTAATAATTTAATATATCGCCAGTGGTTAGT
CGTCATTTATTTCATCTTCTTTATTTTGATGCTATTTTACATGAACCGCTCTTACCAAAATAAGCTTGAAAAAGAAATTG
CTTCAGCACGTGAGCAAGAGTTGCGTTCGCTGTCTGCTTATAGTAAACAGATTGAGGGCTTGTATGAAGAATTACGAGCT
TTTAGACATGATTATGCCAATATTTTAGCTAGTTTAAAAGAGGGCATTGAGCAGAATGATATGGGGATTGTTCGACATAT
TTATGATTCTGTGTTGACGGATTCAGCTGATTTTATTCAAAATAGTAAGTTTGACATTGGGCGTTTAGCTAATATCGATG
ACGATGCGATAAAAAGTTTATTGTCTGCCAAATTTTTGGAAGCTGAGGCTAATCATATTGAGGTCAATCTTGAAGTTAAA
GATAAGATTGGTGCACCAGCGATGCCACTTTTGGATTATATTCGTATACTTGCTATTTTATGTGATAATGCGATTGAAGC
TGCGCTTGAGGCAGAAAATCCAGCCATTACGATTGCTTGTTTTTATCAAGATGATGATTATGTGTTAATTGTGGATAACT
CAACTAAAGAAGAAAATATTCCAGTTAATTTGATTTATCAAAAAGATTATTCAAGTAAGGGGTATGGTCGAGGTATTGGT
CTTAAAACAATTCATCAGATGATGAGAAAATATCCTGACTTAATTGTTCAAACAGATAGTAAAAATTATCATTTTTGCCA
AACGATACGTATTAAAAAAGCATTCGACTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(331-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

87.069

53.211

0.463

Multiple sequence alignment