Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GO596_RS02915 Genome accession   NZ_CP046628
Coordinates   585677..586432 (-) Length   251 a.a.
NCBI ID   WP_003067284.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580677..591432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS02900 (GO596_02900) purC 583452..584162 (-) 711 WP_021141386.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  GO596_RS02905 (GO596_02905) - 584287..584529 (-) 243 WP_003067281.1 acyl carrier protein -
  GO596_RS02910 (GO596_02910) plsX 584547..585542 (-) 996 WP_157339181.1 phosphate acyltransferase PlsX -
  GO596_RS02915 (GO596_02915) recO 585677..586432 (-) 756 WP_003067284.1 DNA repair protein RecO Machinery gene
  GO596_RS02920 (GO596_02920) - 586422..587597 (-) 1176 WP_039691851.1 pyridoxal phosphate-dependent aminotransferase -
  GO596_RS02925 (GO596_02925) - 587784..588755 (-) 972 WP_003067288.1 ribose-phosphate diphosphokinase -
  GO596_RS02930 (GO596_02930) - 588886..590259 (-) 1374 WP_074534144.1 CHAP domain-containing protein -
  GO596_RS02935 (GO596_02935) mreD 590361..590867 (-) 507 WP_157339182.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29212.55 Da        Isoelectric Point: 6.4978

>NTDB_id=353969 GO596_RS02915 WP_003067284.1 585677..586432(-) (recO) [Streptococcus equinus strain CNU 77-23]
MQTKETYGLVLYNRNYREDDKLVKIFTETDGKHMFFVRHAGKSRFNSVIQPLTIAKFIVKINDNGLSFIEDYKEVASFKE
INADLFKLSYASYVTSLADAAVPDNVADSQLFAFLNKTLSLMEEGLDYEILTNIFEIQILERFGISLNLHECAFCHRVGL
PFDFSHKYTGLLCPEHYAKDEHRSHVDPNMLYLLDRFQAIQFDELKTISVKPDMKRKLRLFIDDIYDNYVGVRLKSKKFI
DDLGSWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=353969 GO596_RS02915 WP_003067284.1 585677..586432(-) (recO) [Streptococcus equinus strain CNU 77-23]
ATGCAAACTAAAGAAACTTATGGTCTTGTCCTCTATAATCGCAATTATCGCGAGGATGACAAACTAGTTAAGATTTTTAC
AGAAACAGATGGCAAGCATATGTTTTTTGTGAGACATGCGGGAAAATCTCGTTTTAATTCTGTGATTCAGCCGTTGACCA
TTGCTAAATTTATCGTGAAAATTAACGACAATGGTTTGTCGTTCATCGAGGATTATAAGGAAGTGGCTTCGTTTAAGGAA
ATCAATGCTGATTTATTTAAGTTGTCATATGCTTCTTATGTAACTTCTTTGGCTGATGCTGCTGTGCCTGATAATGTGGC
TGATTCGCAGTTGTTTGCTTTTTTGAACAAGACTTTATCTTTGATGGAAGAGGGTCTTGATTATGAAATCTTGACGAATA
TCTTTGAGATTCAGATTTTGGAGCGCTTTGGTATTAGTTTGAATCTGCATGAATGTGCGTTTTGTCATCGTGTAGGACTT
CCTTTTGATTTTTCTCATAAGTATACTGGCTTGCTTTGCCCAGAGCATTATGCAAAAGATGAGCATCGAAGTCACGTTGA
TCCGAATATGCTTTATCTCCTTGATCGTTTTCAAGCCATTCAATTTGATGAGTTAAAGACAATTTCGGTTAAACCTGACA
TGAAACGAAAACTGCGTTTATTTATCGATGATATCTATGATAACTATGTCGGTGTTCGATTGAAGAGTAAGAAGTTCATC
GATGATTTAGGTTCTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.745

100

0.637