Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   GO596_RS02315 Genome accession   NZ_CP046628
Coordinates   477357..477692 (-) Length   111 a.a.
NCBI ID   WP_198362600.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472357..482692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS02285 (GO596_02285) proC 472762..473532 (+) 771 WP_024344501.1 pyrroline-5-carboxylate reductase -
  GO596_RS02290 (GO596_02290) - 473584..474219 (-) 636 WP_027968028.1 CPBP family intramembrane glutamic endopeptidase -
  GO596_RS02295 (GO596_02295) - 474231..474683 (-) 453 WP_157339146.1 ABC transporter permease -
  GO596_RS02300 (GO596_02300) - 474739..474936 (-) 198 WP_027968026.1 helix-turn-helix transcriptional regulator -
  GO596_RS02305 (GO596_02305) - 475094..476293 (-) 1200 WP_045798327.1 acetate kinase -
  GO596_RS02310 (GO596_02310) comGH 476347..477303 (-) 957 WP_157339147.1 class I SAM-dependent methyltransferase Machinery gene
  GO596_RS02315 (GO596_02315) comGG 477357..477692 (-) 336 WP_198362600.1 competence type IV pilus minor pilin ComGG Machinery gene
  GO596_RS02320 (GO596_02320) comGF 477679..478116 (-) 438 WP_157339148.1 competence type IV pilus minor pilin ComGF Machinery gene
  GO596_RS02325 (GO596_02325) comGE 478100..478393 (-) 294 WP_157339149.1 competence type IV pilus minor pilin ComGE Machinery gene
  GO596_RS02330 (GO596_02330) comGD 478347..478787 (-) 441 WP_074534076.1 competence type IV pilus minor pilin ComGD Machinery gene
  GO596_RS02335 (GO596_02335) comGC 478762..479064 (-) 303 WP_021141433.1 competence type IV pilus major pilin ComGC Machinery gene
  GO596_RS02340 (GO596_02340) comGB 479064..480107 (-) 1044 WP_198289264.1 competence type IV pilus assembly protein ComGB Machinery gene
  GO596_RS02345 (GO596_02345) comGA 480031..480972 (-) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  GO596_RS02350 (GO596_02350) - 481041..481409 (-) 369 WP_021141429.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12875.84 Da        Isoelectric Point: 7.3537

>NTDB_id=353958 GO596_RS02315 WP_198362600.1 477357..477692(-) (comGG) [Streptococcus equinus strain CNU 77-23]
MRQVRAGILLYAMLMAAIFALLLQFYLGRVVASERQHQAQLKHAQAYLMAEISRDYAKDSSGKCYFDKGVVSYQRENEVL
VETVVLENKEEFHYTFSLPKKSEQIIEKESH

Nucleotide


Download         Length: 336 bp        

>NTDB_id=353958 GO596_RS02315 WP_198362600.1 477357..477692(-) (comGG) [Streptococcus equinus strain CNU 77-23]
ATGAGGCAAGTTAGGGCAGGAATATTGTTGTATGCTATGCTGATGGCAGCTATATTTGCTTTGTTGTTACAGTTTTATTT
AGGGCGCGTGGTAGCAAGTGAACGCCAGCATCAGGCACAATTAAAGCACGCGCAAGCTTATTTGATGGCAGAAATCAGCA
GGGATTATGCTAAAGATTCTTCAGGTAAATGTTATTTTGATAAAGGTGTTGTCAGCTACCAACGTGAAAATGAGGTGCTA
GTTGAGACAGTAGTTTTAGAGAATAAAGAGGAGTTTCACTACACTTTTTCTCTTCCAAAAAAATCTGAACAAATCATTGA
AAAAGAAAGTCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

47.423

87.387

0.414
  comGG Streptococcus mutans UA159

47.423

87.387

0.414
  comGG/cglG Streptococcus mitis NCTC 12261

42.105

85.586

0.36