Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GO596_RS00795 Genome accession   NZ_CP046628
Coordinates   157159..157767 (+) Length   202 a.a.
NCBI ID   WP_157339051.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 152159..162767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS00770 (GO596_00770) - 152737..154269 (-) 1533 WP_157339049.1 cell division site-positioning protein MapZ family protein -
  GO596_RS00775 (GO596_00775) - 154333..155505 (-) 1173 WP_157339050.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  GO596_RS00785 (GO596_00785) gpsB 156110..156439 (-) 330 WP_021141777.1 cell division regulator GpsB -
  GO596_RS00790 (GO596_00790) - 156566..157084 (-) 519 WP_021141776.1 DUF1273 domain-containing protein -
  GO596_RS00795 (GO596_00795) recU 157159..157767 (+) 609 WP_157339051.1 Holliday junction resolvase RecU Machinery gene
  GO596_RS00800 (GO596_00800) pbp1a 157754..159979 (+) 2226 WP_157339052.1 penicillin-binding protein PBP1A -
  GO596_RS00805 (GO596_00805) pepC 160070..161407 (-) 1338 WP_039691936.1 aminopeptidase C -
  GO596_RS00810 (GO596_00810) nadE 161661..162485 (-) 825 WP_039691935.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23305.84 Da        Isoelectric Point: 9.9390

>NTDB_id=353942 GO596_RS00795 WP_157339051.1 157159..157767(+) (recU) [Streptococcus equinus strain CNU 77-23]
MVNYPHHIIRKQATPASKKVKKSTINFANRGMSFEAAINETNNYYLSRDIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGRYIDFEAKETRQKTSMPLKNFHAHQIEHMEHVLKQDGICFVLLHFSTIKETYYLPASALVDFYQIN
LGTKSMPLDYIRKNGYMVTTSSLPQVPYLDIIDQKILGGDHN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=353942 GO596_RS00795 WP_157339051.1 157159..157767(+) (recU) [Streptococcus equinus strain CNU 77-23]
ATGGTTAATTATCCACATCATATTATTCGAAAACAAGCAACCCCAGCTTCTAAAAAGGTAAAAAAATCAACAATTAATTT
TGCTAACCGTGGGATGAGTTTTGAAGCAGCAATCAATGAAACTAATAATTACTACTTATCTCGAGATATTGCTGTTATTC
ACAAAAAACCAACCCCAATTCAAATTGTAAAAGTTGATTATCCTAAAAGAAGCCGTGCAAAAATTGTAGAAGCTTACTTT
CGTCAAGCATCAACAACCGATTATTCTGGCGTTTATAAAGGTCGCTATATTGACTTTGAAGCTAAAGAAACTCGGCAAAA
GACATCCATGCCACTTAAAAATTTTCATGCCCACCAGATTGAGCACATGGAACATGTCTTAAAGCAAGATGGAATTTGCT
TTGTATTACTTCATTTTTCAACAATTAAGGAAACCTATTATTTACCTGCTAGTGCTTTAGTGGACTTTTACCAAATCAAT
CTCGGCACCAAATCCATGCCACTTGATTATATCAGAAAAAATGGATATATGGTGACGACAAGTTCACTCCCTCAGGTTCC
TTATTTGGATATTATCGATCAAAAAATTTTAGGCGGTGATCACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495