Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GO602_RS23185 Genome accession   NZ_CP046602
Coordinates   4966088..4967530 (-) Length   480 a.a.
NCBI ID   WP_003120852.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4961088..4972530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS23155 (GO602_23130) - 4961414..4962529 (+) 1116 WP_024916508.1 glycosyltransferase family 4 protein -
  GO602_RS23160 (GO602_23135) - 4962522..4963283 (+) 762 WP_024916507.1 DUF2334 domain-containing protein -
  GO602_RS23165 (GO602_23140) - 4963280..4964281 (+) 1002 WP_058141202.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GO602_RS23170 (GO602_23145) - 4964256..4964468 (-) 213 WP_124181297.1 hypothetical protein -
  GO602_RS23175 (GO602_23150) purU 4964518..4965369 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  GO602_RS23180 (GO602_23155) mvaT 4965629..4966003 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  GO602_RS23185 (GO602_23160) sbcB 4966088..4967530 (-) 1443 WP_003120852.1 exodeoxyribonuclease I Machinery gene
  GO602_RS23190 (GO602_23165) - 4967755..4968492 (+) 738 WP_024916503.1 hypothetical protein -
  GO602_RS23195 (GO602_23170) - 4968530..4969327 (+) 798 WP_079982868.1 RDD family protein -
  GO602_RS23200 (GO602_23175) - 4969324..4970304 (+) 981 WP_024916501.1 stage II sporulation protein M -
  GO602_RS23205 (GO602_23180) - 4970291..4971862 (+) 1572 WP_124181296.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55491.79 Da        Isoelectric Point: 5.5542

>NTDB_id=353886 GO602_RS23185 WP_003120852.1 4966088..4967530(-) (sbcB) [Pseudomonas aeruginosa strain CMC-115]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=353886 GO602_RS23185 WP_003120852.1 4966088..4967530(-) (sbcB) [Pseudomonas aeruginosa strain CMC-115]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGTCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGACATCC
TGCCCCACCCGATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCACAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTATCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGTCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGTTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCACTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGACCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGGCGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCTCGCTTGCAGGAGTTG
TTCTTCCGTTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGCCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAGCGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44

Multiple sequence alignment