Detailed information NTG0353878

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GO602_RS18945
• Genome accession: NZ_CP046602
• Coordinates: 4091601..4092605 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CMC-115
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4086601..4097605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO602_RS18930 (GO602_18910)	-	4087075..4088082 (+)	1008	WP_024916104.1	TolB family protein	-
GO602_RS18935 (GO602_18915)	mutS	4088218..4090785 (+)	2568	WP_024916105.1	DNA mismatch repair protein MutS	-
GO602_RS18940 (GO602_18920)	fdxA	4090852..4091175 (+)	324	WP_003119354.1	ferredoxin FdxA	-
GO602_RS18945 (GO602_18925)	rpoS	4091601..4092605 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GO602_RS18950 (GO602_18930)	-	4092710..4093603 (-)	894	WP_024916107.1	peptidoglycan DD-metalloendopeptidase family protein	-
GO602_RS18955 (GO602_18935)	-	4093649..4094284 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GO602_RS18960 (GO602_18940)	surE	4094317..4095066 (-)	750	WP_121501316.1	5'/3'-nucleotidase SurE	-
GO602_RS18965 (GO602_18945)	truD	4095054..4096121 (-)	1068	WP_168334429.1	tRNA pseudouridine(13) synthase TruD	-
GO602_RS18970 (GO602_18950)	ispF	4096118..4096591 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GO602_RS18975 (GO602_18955)	fghA	4096662..4097513 (-)	852	WP_024916110.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=353878 GO602_RS18945 WP_003113871.1 4091601..4092605(-) (rpoS) [Pseudomonas aeruginosa strain CMC-115]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=353878 GO602_RS18945 WP_003113871.1 4091601..4092605(-) (rpoS) [Pseudomonas aeruginosa strain CMC-115]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTTCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAGCAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTGCACTTCGCTCGTTTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGCTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGTTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCCTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCCCTTGGTCCGGACTCGGACAAGACCCTGCTG
GACACGCTCACCGACGATCGCCCGACCGATCCCTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGTATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACTCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGTTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653