Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GO602_RS15860 Genome accession   NZ_CP046602
Coordinates   3426268..3426882 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3421268..3431882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS15840 (GO602_15830) - 3422723..3423352 (+) 630 WP_003091190.1 CsiV family protein -
  GO602_RS15845 (GO602_15835) - 3423394..3424131 (-) 738 WP_024917569.1 S-methyl-5'-thioinosine phosphorylase -
  GO602_RS15850 (GO602_15840) nagZ 3424143..3425141 (-) 999 WP_124181136.1 beta-N-acetylhexosaminidase -
  GO602_RS15855 (GO602_15845) psrA 3425335..3426036 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  GO602_RS15860 (GO602_15850) dinR/lexA 3426268..3426882 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  GO602_RS15865 (GO602_15855) sulA 3426894..3427379 (+) 486 WP_024917571.1 SOS-induced cell division inhibitor SulA -
  GO602_RS15870 (GO602_15860) - 3427402..3427635 (-) 234 WP_121128827.1 hypothetical protein -
  GO602_RS15875 (GO602_15865) - 3427841..3428359 (-) 519 WP_121305470.1 DUF6586 family protein -
  GO602_RS15880 (GO602_15870) topA 3428465..3431071 (-) 2607 WP_121128823.1 type I DNA topoisomerase -
  GO602_RS15885 (GO602_15875) - 3431162..3431425 (-) 264 WP_061194912.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=353868 GO602_RS15860 WP_003091196.1 3426268..3426882(+) (dinR/lexA) [Pseudomonas aeruginosa strain CMC-115]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=353868 GO602_RS15860 WP_003091196.1 3426268..3426882(+) (dinR/lexA) [Pseudomonas aeruginosa strain CMC-115]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAGGATCATGGCTTTCCGCCGAC
CCGCGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCGCGCAAGG
GCGCCATCGAAATGACCCCGGGCGCCTCCCGCGGCATCCGCATTCCCGGCTTCGAGCCGCATGCCGCCAACGACGACGAG
GGCCTGCCGGTAATCGGTCGGGTCGCCGCCGGGGCGCCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGAATCCTCGACG
GCGACCTGCTAGCCGTCCACGTCACCCGCGAAGCACGCAACGGCCAGGTGGTGGTCGCACGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAGGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387