Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   GO602_RS15620 Genome accession   NZ_CP046602
Coordinates   3378053..3378409 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3373053..3383409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS15595 (GO602_15585) - 3373431..3374063 (-) 633 WP_024918036.1 DUF4823 domain-containing protein -
  GO602_RS15600 (GO602_15590) - 3374128..3375024 (-) 897 WP_124181141.1 radical SAM protein -
  GO602_RS15605 (GO602_15595) - 3375179..3375817 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  GO602_RS15610 (GO602_15600) - 3375903..3377036 (+) 1134 WP_124181140.1 aminotransferase class V-fold PLP-dependent enzyme -
  GO602_RS15615 (GO602_15605) - 3377262..3378038 (-) 777 WP_024918033.1 TatD family hydrolase -
  GO602_RS15620 (GO602_15610) pilZ 3378053..3378409 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  GO602_RS15625 (GO602_15615) - 3378443..3379429 (-) 987 WP_024918032.1 DNA polymerase III subunit delta' -
  GO602_RS15630 (GO602_15620) tmk 3379422..3380054 (-) 633 WP_024918031.1 dTMP kinase -
  GO602_RS15635 (GO602_15625) mltG 3380083..3381132 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  GO602_RS15640 (GO602_15630) pabC 3381138..3381953 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  GO602_RS15645 (GO602_15635) fabF 3381953..3383197 (-) 1245 WP_024918029.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=353865 GO602_RS15620 WP_003091119.1 3378053..3378409(-) (pilZ) [Pseudomonas aeruginosa strain CMC-115]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=353865 GO602_RS15620 WP_003091119.1 3378053..3378409(-) (pilZ) [Pseudomonas aeruginosa strain CMC-115]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449