Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GO602_RS08240 Genome accession   NZ_CP046602
Coordinates   1731612..1732208 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726612..1737208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS08215 (GO602_08210) - 1727549..1727926 (+) 378 WP_003083354.1 hypothetical protein -
  GO602_RS08225 (GO602_08220) - 1728180..1729043 (-) 864 WP_124181303.1 substrate-binding periplasmic protein -
  GO602_RS08230 (GO602_08225) dnaX 1729080..1731161 (+) 2082 WP_168334336.1 DNA polymerase III subunit gamma/tau -
  GO602_RS08235 (GO602_08230) - 1731207..1731533 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  GO602_RS08240 (GO602_08235) recR 1731612..1732208 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  GO602_RS08245 (GO602_08240) - 1732330..1733478 (+) 1149 WP_124181305.1 acyl-CoA dehydrogenase family protein -
  GO602_RS08250 (GO602_08245) - 1733491..1734030 (-) 540 WP_124129556.1 CbrC family protein -
  GO602_RS08255 (GO602_08250) - 1734104..1734991 (-) 888 WP_124181306.1 SDR family NAD(P)-dependent oxidoreductase -
  GO602_RS08260 (GO602_08255) - 1734988..1736571 (-) 1584 WP_003121915.1 flavin-containing monooxygenase -
  GO602_RS29780 - 1736694..1736861 (+) 168 Protein_1636 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=353848 GO602_RS08240 WP_003087237.1 1731612..1732208(+) (recR) [Pseudomonas aeruginosa strain CMC-115]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=353848 GO602_RS08240 WP_003087237.1 1731612..1732208(+) (recR) [Pseudomonas aeruginosa strain CMC-115]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCAGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTTAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTTGCCACCAACCCCACCGTGGAAGGCGAGGCCACTGCCCACTATATCGCCCAGCTGCTGGCC
GGCCGGGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATTTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment