Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GO602_RS02120 Genome accession   NZ_CP046602
Coordinates   459319..459684 (+) Length   121 a.a.
NCBI ID   WP_024918009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454319..464684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS02090 (GO602_02090) pyrR 454941..455453 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GO602_RS02095 (GO602_02095) ruvX 455565..455999 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  GO602_RS02100 (GO602_02100) - 455999..456568 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  GO602_RS02105 (GO602_02105) - 456617..457510 (-) 894 WP_003084580.1 TonB family protein -
  GO602_RS02110 (GO602_02110) gshB 457656..458609 (-) 954 WP_121306137.1 glutathione synthase -
  GO602_RS02115 (GO602_02115) pilG 458865..459272 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  GO602_RS02120 (GO602_02120) pilH 459319..459684 (+) 366 WP_024918009.1 twitching motility response regulator PilH Machinery gene
  GO602_RS02125 (GO602_02125) - 459734..460270 (+) 537 WP_168334254.1 chemotaxis protein CheW -
  GO602_RS02130 (GO602_02130) pilJ 460356..462404 (+) 2049 WP_024918008.1 chemotaxis chemoreceptor PilJ -
  GO602_RS02135 (GO602_02135) pilK 462465..463340 (+) 876 WP_024918007.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13289.30 Da        Isoelectric Point: 5.1961

>NTDB_id=353832 GO602_RS02120 WP_024918009.1 459319..459684(+) (pilH) [Pseudomonas aeruginosa strain CMC-115]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSSIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=353832 GO602_RS02120 WP_024918009.1 459319..459684(+) (pilH) [Pseudomonas aeruginosa strain CMC-115]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTGGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGGCAGCTGACCAAGGACGCCGAGACCAGCTCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGTGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAAACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364