Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GO602_RS01935 Genome accession   NZ_CP046602
Coordinates   426750..428090 (+) Length   446 a.a.
NCBI ID   WP_168334253.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421750..433090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS01915 (GO602_01915) - 422587..423153 (-) 567 WP_124181620.1 hypothetical protein -
  GO602_RS01920 (GO602_01920) rsmD 423156..423752 (-) 597 WP_058140959.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GO602_RS01925 (GO602_01925) - 423752..425239 (-) 1488 WP_058140960.1 M16 family metallopeptidase -
  GO602_RS01930 (GO602_01930) - 425232..426629 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  GO602_RS01935 (GO602_01935) pilA 426750..428090 (+) 1341 WP_168334253.1 signal recognition particle-docking protein FtsY Machinery gene
  GO602_RS01940 (GO602_01940) ftsE 428087..428758 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  GO602_RS01945 (GO602_01945) ftsX 428758..429765 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  GO602_RS01950 (GO602_01950) rpoH 429878..430732 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  GO602_RS01955 (GO602_01955) - 430797..431402 (+) 606 WP_024916906.1 hypothetical protein -
  GO602_RS01960 (GO602_01960) mtgA 431407..432138 (-) 732 WP_121306061.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  GO602_RS01965 (GO602_01965) - 432175..432552 (+) 378 WP_024916904.1 DUF423 domain-containing protein -
  GO602_RS01970 (GO602_01970) thiS 432655..432855 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 47449.87 Da        Isoelectric Point: 4.6393

>NTDB_id=353828 GO602_RS01935 WP_168334253.1 426750..428090(+) (pilA) [Pseudomonas aeruginosa strain CMC-115]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPPAPVAE
APLASDEPASAEEHSPRLEALVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMA
SLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDAAREP
YVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKA
RGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAK
GGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=353828 GO602_RS01935 WP_168334253.1 426750..428090(+) (pilA) [Pseudomonas aeruginosa strain CMC-115]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACGGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGCCGGCGCCGGTTGCCGAA
GCGCCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCTCGAGGCGCTCGTCGCGCAACCCGAGCC
TATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGC
CGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCC
AGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTTCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGG
CGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGT
ACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGCCGCACGCGAGCCC
TATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGA
GGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCA
ACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCC
CGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGT
GCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCACGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACG
CCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAG
GGCGGGGTGATTTTCGCCCTGGCCAAGCAATTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCT
CCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(156-221)

SRP54-type protein, GTPase domain (SRP54)

(241-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.907

96.413

0.462

Multiple sequence alignment