Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GO005_RS20760 Genome accession   NZ_CP046592
Coordinates   4040339..4041133 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain TR21     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4035339..4046133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS20735 (GO005_20735) - 4036452..4037135 (-) 684 WP_024573086.1 response regulator transcription factor -
  GO005_RS20740 (GO005_20740) - 4037347..4038246 (+) 900 WP_015250814.1 PepSY domain-containing protein -
  GO005_RS20745 (GO005_20745) - 4038407..4038907 (+) 501 WP_032722795.1 PepSY domain-containing protein -
  GO005_RS20750 (GO005_20750) - 4038904..4039034 (-) 131 Protein_4064 hypothetical protein -
  GO005_RS20755 (GO005_20755) htrA 4039055..4040257 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  GO005_RS20760 (GO005_20760) vicX 4040339..4041133 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  GO005_RS20765 (GO005_20765) walI 4041155..4041997 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  GO005_RS20770 (GO005_20770) walH 4041984..4043351 (-) 1368 WP_032722849.1 WalRK two-component regulatory system regulator WalH -
  GO005_RS20775 (GO005_20775) walK 4043341..4045176 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  GO005_RS20780 (GO005_20780) walR 4045184..4045891 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=353820 GO005_RS20760 WP_003226939.1 4040339..4041133(-) (vicX) [Bacillus subtilis strain TR21]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=353820 GO005_RS20760 WP_003226939.1 4040339..4041133(-) (vicX) [Bacillus subtilis strain TR21]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AACGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTAAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53