Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GO005_RS20420 Genome accession   NZ_CP046592
Coordinates   3967819..3968508 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain TR21     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3962819..3973508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS20400 (GO005_20395) yxeA 3963724..3964071 (-) 348 WP_003227084.1 YxeA family protein -
  GO005_RS20405 (GO005_20400) yxdM 3964085..3965953 (-) 1869 WP_032722764.1 ABC transporter permease YxdM -
  GO005_RS20410 (GO005_20405) yxdL 3965928..3966701 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  GO005_RS20415 (GO005_20410) yxdK 3966845..3967822 (-) 978 WP_019712858.1 two-component system sensor histidine kinase YxdK -
  GO005_RS20420 (GO005_20415) braR 3967819..3968508 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  GO005_RS20425 (GO005_20420) iolJ 3968616..3969488 (-) 873 WP_019712596.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  GO005_RS20430 (GO005_20425) iolI 3969509..3970345 (-) 837 WP_019712597.1 2-keto-myo-inositol isomerase -
  GO005_RS20435 (GO005_20430) iolH 3970431..3971300 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  GO005_RS20440 (GO005_20435) iolG 3971320..3972354 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=353817 GO005_RS20420 WP_003243527.1 3967819..3968508(-) (braR) [Bacillus subtilis strain TR21]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=353817 GO005_RS20420 WP_003243527.1 3967819..3968508(-) (braR) [Bacillus subtilis strain TR21]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAAATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406