Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GO005_RS09345 Genome accession   NZ_CP046592
Coordinates   1793335..1793766 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain TR21     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788335..1798766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS09325 (GO005_09315) spoVS 1788896..1789156 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  GO005_RS09330 (GO005_09320) tdh 1789422..1790465 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  GO005_RS09335 (GO005_09325) kbl 1790478..1791656 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  GO005_RS09340 (GO005_09330) miaB 1791804..1793333 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GO005_RS09345 (GO005_09335) ymcA 1793335..1793766 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GO005_RS09350 (GO005_09340) cotE 1794028..1794573 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  GO005_RS09355 (GO005_09345) hexA 1794706..1797282 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=353747 GO005_RS09345 WP_003231834.1 1793335..1793766(+) (ymcA) [Bacillus subtilis strain TR21]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=353747 GO005_RS09345 WP_003231834.1 1793335..1793766(+) (ymcA) [Bacillus subtilis strain TR21]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1