Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GO005_RS04475 Genome accession   NZ_CP046592
Coordinates   870498..871214 (+) Length   238 a.a.
NCBI ID   WP_032723001.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 865498..876214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS04460 (GO005_04450) yfkQ 865575..867116 (-) 1542 Protein_837 spore germination protein -
  GO005_RS04465 (GO005_04455) treP 867309..868721 (+) 1413 WP_032722999.1 PTS system trehalose-specific EIIBC component -
  GO005_RS04470 (GO005_04460) treC 868792..870477 (+) 1686 WP_032723000.1 alpha,alpha-phosphotrehalase -
  GO005_RS04475 (GO005_04465) treR 870498..871214 (+) 717 WP_032723001.1 trehalose operon repressor Regulator
  GO005_RS04480 (GO005_04470) hypO 871354..872019 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27859.85 Da        Isoelectric Point: 7.1736

>NTDB_id=353700 GO005_RS04475 WP_032723001.1 870498..871214(+) (treR) [Bacillus subtilis strain TR21]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDMWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=353700 GO005_RS04475 WP_032723001.1 870498..871214(+) (treR) [Bacillus subtilis strain TR21]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATGTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTATTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGGTTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416