Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   GO005_RS02775 Genome accession   NZ_CP046592
Coordinates   530303..530737 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain TR21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525303..535737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS02745 (GO005_02730) ydaD 525950..526810 (+) 861 WP_032722917.1 SDR family oxidoreductase -
  GO005_RS02750 (GO005_02735) lyxE 526826..527329 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  GO005_RS02755 (GO005_02740) ydaF 527417..527968 (+) 552 WP_014478866.1 GNAT family protein -
  GO005_RS02760 (GO005_02745) ydaG 528046..528468 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  GO005_RS02765 (GO005_02750) amj 528974..529783 (+) 810 WP_032722918.1 lipid II flippase Amj -
  GO005_RS02770 (GO005_02755) ydzA 529828..530118 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  GO005_RS02775 (GO005_02760) lrpC 530303..530737 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  GO005_RS02780 (GO005_02765) topB 530802..532985 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  GO005_RS02785 (GO005_02770) ephJ 533188..534276 (+) 1089 WP_003246551.1 lipoprotein -
  GO005_RS02790 (GO005_02775) epsK 534257..535108 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=353696 GO005_RS02775 WP_003246585.1 530303..530737(+) (lrpC) [Bacillus subtilis strain TR21]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=353696 GO005_RS02775 WP_003246585.1 530303..530737(+) (lrpC) [Bacillus subtilis strain TR21]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1