Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   GO004_RS13720 Genome accession   NZ_CP046591
Coordinates   2624968..2625198 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain R31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2619968..2630198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS13710 (GO004_13700) spoVT 2620693..2621229 (-) 537 WP_003218365.1 stage V sporulation protein T -
  GO004_RS13715 (GO004_13705) mfd 2621365..2624898 (-) 3534 WP_003226723.1 transcription-repair coupling factor -
  GO004_RS13720 (GO004_13710) subA/fin 2624968..2625198 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  GO004_RS13725 (GO004_13715) pth 2625258..2625824 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  GO004_RS13730 (GO004_13720) rplYB 2625931..2626545 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  GO004_RS13735 (GO004_13725) prsS 2626631..2627584 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  GO004_RS13740 (GO004_13730) glmU 2627607..2628977 (-) 1371 WP_015715104.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  GO004_RS13745 (GO004_13735) spoVG 2629170..2629463 (-) 294 WP_003218346.1 septation regulator SpoVG -
  GO004_RS13750 (GO004_13740) ridA 2629658..2630035 (-) 378 WP_015715103.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=353622 GO004_RS13720 WP_003243417.1 2624968..2625198(-) (subA/fin) [Bacillus subtilis strain R31]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=353622 GO004_RS13720 WP_003243417.1 2624968..2625198(-) (subA/fin) [Bacillus subtilis strain R31]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1